Hi,
I just attended your talk today and thought the technique seemed pretty promising.
When trying to run the example from the readme, I get the following error:
FileNotFoundError: [Errno 2] No such file or directory: '/sir-reference-data//common_variants_uniprot.tsv'
I notice that the common_variants_uniprot.tsv file is actually created by preprocess_reference_data.py but when I try to run that script I get the following permissions denied error:
File "/home/craut/miniconda3/envs/sir-env/lib/python3.8/site-packages/gcsfs/retry.py", line 117, in validate_response
raise HttpError(error)
gcsfs.retry.HttpError: Anonymous caller does not have storage.objects.get access to the Google Cloud Storage object. Permission 'storage.objects.get' denied on resource (or it may not exist)., 401
Is common_variants_uniprot.tsv supposed to ship with reference.tar.gz? Or can I download it from a public requestor pays bucket instead?
Thanks,
Chinmay
Hi,
I just attended your talk today and thought the technique seemed pretty promising.
When trying to run the example from the readme, I get the following error:
I notice that the
common_variants_uniprot.tsvfile is actually created bypreprocess_reference_data.pybut when I try to run that script I get the following permissions denied error:Is
common_variants_uniprot.tsvsupposed to ship withreference.tar.gz? Or can I download it from a public requestor pays bucket instead?Thanks,
Chinmay