Invalid transitive dependencies

[igor-kupczynski]

Invalid transitive dependencies.

When trying to build from master the following error occurs:

[ERROR] Failed to execute goal on project isa-graphparser: Could not resolve
dependencies for project org.isatools:isa-graphparser:jar:1.0.1-SNAPSHOT: Failed
to collect dependencies at org.isatools:ISAcreator:jar:1.7.7 ->
org.isatools:import_layer:jar:1.6.5 -> uk.ac.ebi.pride:pride-core:jar:2.7.1 ->
ojb:db-ojb:jar:1.0.4-pride -> xalan:xalan:jar:2.4: Failed to read artifact
descriptor for xalan:xalan:jar:2.4: Could not transfer artifact
xalan:xalan:pom:2.4 from/to repository.codehaus
(http://repository.codehaus.org): repository.codehaus.org: unknown error:
Unknown host repository.codehaus.org: unknown error -> [Help 1]

There issue here is

• org.isatools:isa-graphparser:jar:1.0.1-SNAPSHOT depends transitively on ojb:db-ojb:jar:1.0.4-pridewhich in turn references not existing repo repository.codehaus.org (codehaus was shut down https://www.codehaus.org/)
• It is impossible to provide xalan:xalan:2.4 directly, as it exists in mvn central as 2.4.0 and not 2.4

Following workaround is possible:

mvn dependency:get -Dartifact=xalan:xalan:2.4.0

mvn install:install-file -Dfile=$HOME/.m2/repository/xalan/xalan/2.4.0/xalan-2.4.0.jar -DgroupId=xalan -DartifactId=xalan -Dversion=2.4 -Dpackaging=jar