easifish/modules.json at main · JaneliaSciComp/easifish · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
{
    "name": "JaneliaSciComp/easifish",
    "homePage": "https://github.com/JaneliaSciComp/easifish",
    "repos": {
        "git@github.com:JaneliaSciComp/nextflow-modules.git": {
            "modules": {
                "janelia": {
                    "bigstitcher/module": {
                        "branch": "main",
                        "git_sha": "a846116933da2c8cb95fe3ba945a6c95e4a0921d",
                        "installed_by": ["modules"]
                    },
                    "bigstream/computeinverse": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/correlationmetric": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/deform": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/foregroundmask": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/globalalign": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/localalign": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "bigstream/transformcoords": {
                        "branch": "main",
                        "git_sha": "59be9c630ba05eac45121a3eb0e999ae57fe8297",
                        "installed_by": ["modules"]
                    },
                    "omezarrtools/multiscale": {
                        "branch": "main",
                        "git_sha": "55870e39751134a934ac9497ca71b8410cf617cc",
                        "installed_by": ["modules"]
                    },
                    "segtools/distributed/cellpose": {
                        "branch": "main",
                        "git_sha": "2907b6751db2c118da8e3c3d0cf74d18fdf90e27",
                        "installed_by": ["modules"]
                    },
                    "segtools/distributed/mergelabels": {
                        "branch": "main",
                        "git_sha": "2907b6751db2c118da8e3c3d0cf74d18fdf90e27",
                        "installed_by": ["modules"]
                    },
                    "spots/fishspots": {
                        "branch": "main",
                        "git_sha": "b5d6f2ee5878043ca6582bb588a74b4843119021",
                        "installed_by": ["modules"]
                    },
                    "spots/rsfish": {
                        "branch": "main",
                        "git_sha": "a846116933da2c8cb95fe3ba945a6c95e4a0921d",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "janelia": {
                    "dask_start": {
                        "branch": "main",
                        "git_sha": "a846116933da2c8cb95fe3ba945a6c95e4a0921d",
                        "installed_by": ["subworkflows"]
                    },
                    "dask_stop": {
                        "branch": "main",
                        "git_sha": "4261356a66340734ba86409fb1c7b4fe50dde206",
                        "installed_by": ["subworkflows"]
                    },
                    "spark_start": {
                        "branch": "main",
                        "git_sha": "a846116933da2c8cb95fe3ba945a6c95e4a0921d",
                        "installed_by": ["subworkflows"]
                    },
                    "spark_stop": {
                        "branch": "main",
                        "git_sha": "dbb8ff089c1316dd2cddeb041d0131bfba1f8a11",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        },
        "https://github.com/nf-core/modules.git": {
            "subworkflows": {
                "nf-core": {
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "f0b535b3ae20080f8db03dd5388876ad1ec29d70",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}