New feature
I was trying to stitch a large sample. The whole stitching pipeline seems to have a few consecutive steps, including:
- parse czi tile
- czi2n5
- retile z
- flatfield correction
- stitch
- fuse
where each step could take long to complete. If the pipeline was stopped in the middle, we have to rerun the entire thing from the very beginning.
I was wondering if we can skip those steps if they have been done, in much of the same way as we can already choose to skip registration, spot_extraction, etc? Thanks!
Proposal
For example, can we skip czi2n5 if that step has been completed in a previous run? Can we choose to do fuse only, if all previous steps have been completed?
Usage scenario
This will make stitching large sample much easier than now, especially when it is run on a modest server or on a computer cluster that restricts user time.
New feature
I was trying to stitch a large sample. The whole stitching pipeline seems to have a few consecutive steps, including:
where each step could take long to complete. If the pipeline was stopped in the middle, we have to rerun the entire thing from the very beginning.
I was wondering if we can skip those steps if they have been done, in much of the same way as we can already choose to skip registration, spot_extraction, etc? Thanks!
Proposal
For example, can we skip czi2n5 if that step has been completed in a previous run? Can we choose to do fuse only, if all previous steps have been completed?
Usage scenario
This will make stitching large sample much easier than now, especially when it is run on a modest server or on a computer cluster that restricts user time.