From fb902f9ceeea76f2b5ddc11d11b88891d525d20c Mon Sep 17 00:00:00 2001 From: jeffreyHoelzel Date: Fri, 22 May 2026 09:56:42 -0700 Subject: [PATCH] fix: made top-k enrichment plot notebook more general --- ...ichment.ipynb => topk_reactivity_enrichment.ipynb} | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) rename notebooks/{cwp_topk_reactivity_enrichment.ipynb => topk_reactivity_enrichment.ipynb} (97%) diff --git a/notebooks/cwp_topk_reactivity_enrichment.ipynb b/notebooks/topk_reactivity_enrichment.ipynb similarity index 97% rename from notebooks/cwp_topk_reactivity_enrichment.ipynb rename to notebooks/topk_reactivity_enrichment.ipynb index 00679ed..7e34458 100644 --- a/notebooks/cwp_topk_reactivity_enrichment.ipynb +++ b/notebooks/topk_reactivity_enrichment.ipynb @@ -2,11 +2,12 @@ "cells": [ { "cell_type": "markdown", + "id": "dcf13676", "metadata": {}, "source": [ - "# CWP Top-K Reactivity Enrichment (v1)\n", + "# Top-K Reactivity Enrichment (v1)\n", "\n", - "This notebook demonstrates practical downselection value by ranking CWP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n", + "This notebook demonstrates practical downselection value by ranking CWP or BKP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n", "\n", "v1 uses current pulled artifacts only (`PredOnes` from `peptide_comparison.csv`) and does not modify pipeline behavior." ] @@ -34,9 +35,11 @@ "outputs": [], "source": [ "# Parameterized config\n", - "base_dir = Path(\"localdata/evals/cocci_eval/seeded_runs\")\n", + "# base_dir = Path(\"data/evals/cwp_eval/seeded_runs\")\n", + "base_dir = Path(\"data/evals/bkp_eval/seeded_runs\")\n", + "# model_id = \"flagship1\"\n", "model_id = \"flagship2\"\n", - "set_id = \"set_01\"\n", + "set_id = \"set_09\"\n", "mode = \"combined\"\n", "\n", "k_start = 500\n",