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schema.json
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10809 lines (10804 loc) · 309 KB
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{
"nodes": [
{
"node": "HMDB",
"example": [
"(+)-(1R,2R)-1,2-Diphenylethane-1,2-diol",
"(+)-7-Isojasmonic acid CoA"
],
"display": [
{
"label": "HMDB ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "ENCODE Histone Modification",
"example": [
"H3K27ac_A549_hg19_1",
"H3K27ac_A549_hg19_2"
],
"display": [
{
"label": "ENCODE Histone Modification ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "Sanger Dep Map",
"example": [
"201T",
"22RV1"
],
"display": [
{
"label": "Sanger Dep Map ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "HuBMAP Azimuth Cell Type",
"example": [
"Human - PBMC - L1 - Monocyte",
"Human - PBMC - L1 - CD4+ T cell"
],
"display": [
{
"label": "HuBMAP Azimuth Cell Type ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "CellMarker",
"example": [
"Macrophage_Abdomen_Human",
"Brown adipocyte_Abdominal fat pad_Human"
],
"display": [
{
"label": "CellMarker ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "PID Pathways",
"example": [
"TCR signaling in naïve CD4+ T cells",
"TCR signaling in naïve CD8+ T cells"
],
"display": [
{
"label": "PID Pathways ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GAD High Level",
"example": [
"cardiovascular",
"metabolic"
],
"display": [
{
"label": "GAD High Level ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "CCLE Mutations",
"example": [
"haematopoietic_and_lymphoid_tissue",
"haematopoietic_and_lymphoid_tissue"
],
"display": [
{
"label": "CCLE Mutations ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GTEx Tissue Sample",
"example": [
"GTEX-s341-0006-SM-3NM8D",
"GTEX-WH7G-0005-SM-3NMBX"
],
"display": [
{
"label": "GTEx Tissue Sample ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "HPO",
"example": [
"severe t lymphocytopenia",
"failure to thrive secondary to recurrent infections"
],
"display": [
{
"label": "HPO ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "LINCS KiNativ",
"example": [
"DCC-2036_Ramos (RA 1)",
"NVP-BHG712_PC-3"
],
"display": [
{
"label": "LINCS KiNativ ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "TCGA",
"example": [
"Lung adenocarcinoma_LUAD_TCGA-05-4244-01A-01R-1107-07",
"Lung adenocarcinoma_LUAD_TCGA-05-4249-01A-01R-1107-07"
],
"display": [
{
"label": "TCGA ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GWASdb Phenotype",
"example": [
"abnormality of cellular immune system",
"abnormality of leukocytes"
],
"display": [
{
"label": "GWASdb Phenotype ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GeneSigDB",
"example": [
"Human Bladder_Kassem02_20genes_RadioSensitiveVsResistant",
"Human Bladder_Kassem02_20genes_CellLine"
],
"display": [
{
"label": "GeneSigDB ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "MSigDB Comp Signatures",
"example": [
"ANK1",
"SPTB"
],
"display": [
{
"label": "MSigDB Comp Signatures ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "DrugBank",
"example": [
"Varenicline",
"Cytisine"
],
"display": [
{
"label": "DrugBank ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GEO Chem Perturbation",
"example": [
"fluoxetine_mus musculus_gpl1261 _gds2803",
"fluoxetine_mus musculus_gpl1261_gds2803"
],
"display": [
{
"label": "GEO Chem Perturbation ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "TISSUES Expts",
"example": [
"fetus",
"placenta"
],
"display": [
{
"label": "TISSUES Expts ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "CCLE Proteomics",
"example": [
"SNU1_STOMACH",
"BT549_BREAST"
],
"display": [
{
"label": "CCLE Proteomics ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "Biocarta",
"example": [
"antisense pathway",
"hemoglobins chaperone"
],
"display": [
{
"label": "Biocarta ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "Klijn Mutations",
"example": [
"stomach",
"stomach"
],
"display": [
{
"label": "Klijn Mutations ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "Pathway Commons",
"example": [
"RETSAT",
"C1orf131"
],
"display": [
{
"label": "Pathway Commons ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "TargetScan Nonconserved",
"example": [
"hsa-miR-520b",
"hsa-miR-520c-3p"
],
"display": [
{
"label": "TargetScan Nonconserved ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "ChEA TF Targets",
"example": [
"KLF2",
"KLF5"
],
"display": [
{
"label": "ChEA TF Targets ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "DISEASES Text Mining",
"example": [
"integumentary system cancer",
"skin cancer"
],
"display": [
{
"label": "DISEASES Text Mining ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "gene",
"example": [
"INTS4L2",
"INTS4"
],
"display": [
{
"label": "gene ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "VirusMINT Virus",
"example": [
"Vaccinia virus",
"Hepatitis E virus (strain Burma)"
],
"display": [
{
"label": "VirusMINT Virus ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "GEO Virus Perturbation",
"example": [
"HCMV_24Hour-Infection+PP2_21084488_GSE24238",
"HCMV_24Hour-Infection_only_21084488_GSE24238"
],
"display": [
{
"label": "GEO Virus Perturbation ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "MPO Phenotype",
"example": [
"abnormal vagal neural crest cell morphology",
"absent vagal neural crest cells"
],
"display": [
{
"label": "MPO Phenotype ID",
"text": "${id'}",
"type": "text"
},
{
"label": "label",
"text": "${label}",
"type": "text"
},
{
"label": "namespace",
"text": "${namespace}",
"type": "text"
},
{
"label": "type",
"text": "${type}",
"type": "text"
}
],
"relation": [],
"search": [
"id",
"label"
]
},
{
"node": "ABA Prenatal Human",
"example": [
"VZ in primary visual cortex",
"VZ in ventromedial extrastriate cortex (VP)"
],
"display": [
{
"label": "ABA Prenatal Human ID",
"text": "${id'}",
"type": "text"
},