Merge pull request #306 from OpenFreeEnergy/update_septop_data

updating septop analysis notebook for new results structure

Author: atravitz

abfe_tutorial/abfe_analysis.ipynb

@@ -70,12 +70,8 @@
    "outputs": [],
    "source": [
     "import numpy as np\n",
-    "import glob\n",
-    "import json\n",
-    "import csv\n",
     "import os\n",
     "import pathlib\n",
-    "from typing import Literal, List\n",
     "from gufe.tokenization import JSON_HANDLER\n",
     "import pandas as pd\n",
     "from openff.units import unit\n",
@@ -94,7 +90,7 @@
     "### Some helper methods to load and format the ABFE results\n",
     "Over the next few cells, we define some helper methods that we will use to load and format the ABFE results.\n",
     "\n",
-    "Note: you do not need to directly interact with any of these, unless you are looking to change the behaviour of how data is being processed"
+    "**Note: you do not need to directly interact with any of these, unless you are looking to change the behaviour of how data is being processed**"
    ]
   },
   {
@@ -182,8 +178,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "\n",
-    "\n",
     "def _get_legs_from_result_jsons(\n",
     "    result_fns: list[pathlib.Path],\n",
     ") -> dict[str, dict[str, list]]:\n",