timsrust_cpp_bridge/.github/workflows/test.yml at master · OpenMS/timsrust_cpp_bridge · GitHub

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name: Tests

on:
  push:
    branches: [master]
  pull_request:
  workflow_dispatch:

jobs:
  stub-tests:
    name: Stub Tests (no dataset)
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Install Rust
        uses: dtolnay/rust-toolchain@stable

      - name: Cargo test (stub mode)
        run: cargo test -- --nocapture

      - name: Build library (debug)
        run: cargo build

      - name: Fetch Catch2
        run: tests_cpp/fetch_catch2.sh

      - name: C++ ABI tests
        run: |
          cd tests_cpp
          make test LIBDIR=../target/debug

  integration-tests:
    name: Integration Tests (real data)
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Install Rust
        uses: dtolnay/rust-toolchain@stable

      - name: Cache test datasets
        id: cache-testdata
        uses: actions/cache@v4
        with:
          path: testdata
          key: test-data-v1

      - name: Download test datasets
        if: steps.cache-testdata.outputs.cache-hit != 'true'
        env:
          GH_TOKEN: ${{ github.token }}
        run: |
          mkdir -p testdata
          gh release download test-data-v1 -D testdata
          unzip testdata/DDA_HeLa_50ng_5_6min.d.zip -d testdata
          unzip testdata/DIA_HeLa_50ng_5_6min.d.zip -d testdata
          rm testdata/*.d.zip

      - name: Build library (release, with timsrust)
        run: cargo build --features with_timsrust --release

      - name: Rust integration tests
        env:
          TIMSRUST_TEST_DATA_DDA: testdata/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d
          TIMSRUST_TEST_DATA_DIA: testdata/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d
        run: cargo test --features with_timsrust -- --nocapture

      - name: Fetch Catch2
        run: tests_cpp/fetch_catch2.sh

      - name: C++ smoke tests
        run: |
          cd tests_cpp
          make test LIBDIR=../target/release \
            DDA=../testdata/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d \
            DIA=../testdata/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d