-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathXRT.html
More file actions
executable file
·193 lines (187 loc) · 11.2 KB
/
XRT.html
File metadata and controls
executable file
·193 lines (187 loc) · 11.2 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
<!DOCTYPE HTML>
<!--
Verti by HTML5 UP
html5up.net | @ajlkn
Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
-->
<html>
<head>
<title>Topp Lab</title>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no" />
<link rel="stylesheet" href="assets/css/main.css" /> </head>
<body class="is-preload no-sidebar">
<div id="page-wrapper">
<!-- Header -->
<div id="header-wrapper">
<header id="header" class="container">
<!-- Logo -->
<div id="logo">
<h1><a href="index.html">Topp Roots Lab</a></h1> <span> </span> </div>
<!-- Nav -->
<nav id="nav">
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="news.html">News</a>
<li class="current"><a href="research.html">Research</a>
<ul>
<li><a href="research.html">Research overview</a></li>
<li><a href="XRT.html">Xray CT</a></li>
<li><a href="XRM.html">Xray Microscopy</a></li>
</ul>
</li>
<li><a href="publications.html">Papers</a></li>
<li> <a href="tools.html">Tools</a>
<ul>
<li><a href="https://github.com/Topp-Roots-Lab/TopoRoot">TopoRoot</a></li>
<li><a href="https://github.com/Topp-Roots-Lab/3d-root-crown-analysis-pipeline">3-D Root
Crown Analysis Pipeline</a></li>
<li><a href="https://github.com/Topp-Roots-Lab/Gia3D">GiaRoots</a></li>
<li><a href="https://github.com/Topp-Roots-Lab/timeseries_analysis">Root timeseries
analysis</a></li>
</ul>
</li>
<li> <a href="data.html">Data</a></li>
<li><a href="lab.html">Team</a></li>
<li><a href="join.html">Join</a></li>
</ul>
</nav>
</header>
</div>
<!-- Main -->
<div id="main-wrapper">
<div class="container">
<div class="row gtr-200">
<div class="col-12 col-12-medium">
<!-- Content -->
<div id="content">
<section class="widget thumbnails">
<h2>Xray CT (XRT)</h2>
<div class="grid">
<div class="row gtr-50">
<div class="col-6">
<h4>Overview</h4>
<p>X-ray tomography (XRT) is a valuable technology for non-destructive imaging both above and below the soil line, providing rich 3D image data of roots and the entire soil ecosphere. Our large industrial scale instrument is a North Star Imaging X5000, that combines a microfocus X-ray source and high resolution flat panel detector with a large interior cabinet and flexible motion control system, allowing high resolution non-destructive imaging over a wide range of sample sizes and densities. </p>
</div>
<div class="col-6">
<a href="" class="image fit"><img src="images/XRT_NorthStar.png" alt="" /></a>
</div>
<div class="col-6">
<h4>How it works</h4>
<p>The flat panel detector can be switched between portrait and landscape orientations according to sample shape and desired resolution. In addition, helical, tiling, and SubpiX scan modes significantly expand sample orientation and scan resolution options. The X5000 was installed in August 2016 and was made possible as part of a research collaboration with Valent BioSciences.</p>
</div>
<div class="col-6">
<a href="" class="image fit"><img src="images/XRT_NorthStar_inside.png" alt="" /></a>
</div>
</div>
</div>
<div class="grid">
<div class="row gtr-50">
<div class="col-4">
<a class="image fit"><div style="padding:67.11% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397539?h=868093d2ac&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="MaizeRootCrown_XRT"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>Excavated maize root crown</h4>
</div>
<div class="col-4">
<a class="image fit"><div style="padding:55.83% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397614?h=85ae310b5e&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="SegmentedMaizeRoots_XRT"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>In-situ maize root</h4> Maize root system that has been computationally segmented from a high resolution scan of roots growing in soil
</div>
<div class="col-4">
<a class="image fit"><div style="padding:74.53% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397476?h=b904085bfa&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="MaizeEar_XRT"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>Mature maize ear</h4>
</div>
</div>
</div>
<div class="grid">
<div class="row gtr-50">
<div class="col-4">
<a class="image fit"><div style="padding:71.84% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397646?h=5593c5b9cf&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479/embed" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen frameborder="0" style="position:absolute;top:0;left:0;width:100%;height:100%;"></iframe></div></a>
<h4>Sorghum panicle</h4>
</div>
<div class="col-4">
<a class="image fit"><div style="padding:56.25% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397447?h=46afb5e9b8&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="Grapes_XRT.mp4"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>Fresh bunch of grapes</h4>
</div>
<div class="col-4">
<a class="image fit"><div style="padding:66.63% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397571?h=8b59319139&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="Pepper_XRT"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>Fresh bell pepper</h4>
</div>
</div>
<div class="grid">
<div class="row gtr-50">
<div class="col-4">
<a class="image fit"><div style="padding:67.84% 0 0 0;position:relative;"><iframe src="https://player.vimeo.com/video/779397590?h=2c02ca6564&loop=1&autoplay=1&badge=0&autopause=0&player_id=0&app_id=58479" frameborder="0" allow="autoplay; fullscreen; picture-in-picture" allowfullscreen style="position:absolute;top:0;left:0;width:100%;height:100%;" title="Pumpkin_XRT"></iframe></div><script src="https://player.vimeo.com/api/player.js"></script></a>
<h4>Halloween pumpkin</h4></div>
<div class="col-4">
<a class="image fit"><img src="" alt="" /></a>
<h4></h4></div>
<div class="col-4">
<a class="image fit"><img src="" alt="" /></a>
<h4></h4></div>
</div>
</div>
<a data-flickr-embed="true" data-header="true" data-footer="true" data-context="true" href="https://www.flickr.com/photos/197139620@N06/52575795014/in/album-72177720304618738/" title="X-Ray Facility"><img src="https://live.staticflickr.com/65535/52575795014_42f6ce0179_b.jpg" width="1024" height="683" alt="X-Ray Facility"></a><script async src="//embedr.flickr.com/assets/client-code.js" charset="utf-8"></script>
</section>
</div>
</div>
</div>
</div>
</div>
<!-- Footer -->
<div id="footer-wrapper">
<footer id="footer" class="container">
<div class="row">
<div class="col-9 col-6-medium col-12-small">
<!-- Links -->
<section class="widget links">
<h3>Site map</h3>
<ul class="style2">
<li><a href="index.html">Home</a></li>
<li><a href="research.html">Research</a></li>
<li><a href="publications.html">Publications</a></li>
<li><a href="tools.html">Tools & resources</a></li>
<li><a href="lab.html">Lab team</a></li>
<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893">Find us</a></li>
<li><a href="join.html">Join us</a></li>
</ul>
</section>
</div>
<div class="col-3 col-6-medium col-12-small">
<!-- Contact -->
<section class="widget contact last">
<h3>Contact</h3>
<ul>
<li><a href="https://twitter.com/RootDevo" class=" icon brands fa-twitter"><span class="label">Twitter</span></a></li>
<li><a href="mailto:CTopp@danforthcenter.org" class="icon brands fa-telegram"><span class="label">Email</span></a></li>
<li><a href="https://www.google.com/maps/dir/?api=1&destination=38.674333,-90.3971893" class="icon brands fa-safari"><span class="label">Address</span></a></li>
<li><a href="https://scholar.google.com/citations?user=-L6lz1IAAAAJ" class="icon brands fa-google"><span class="label">Google scholar</span></a></li>
<li><a href="https://github.com/Topp-Roots-Lab/Topp-Roots-Lab.github.io" class="icon brands fa-github"><span class="label">Github</span></a></li>
</ul>
</section>
</div>
</div>
<div class="row">
<div class="col-12">
<div id="copyright">
<ul class="menu">
<li>© Christopher Topp [All rights reserved]</li>
<li>designed using Bootstrap 4.0</li>
<li>hosted on <i class="fab fa-github"></i></li>
<li>Source code available <a href="https://github.com/Topp-Roots-Lab/Topp-Roots-Lab.github.io">here</a></li>
<li>and maintained by the lab</li>
<li>Design: <a href="https://html5up.net">HTML5 UP</a></li>
</ul>
</div>
</div>
</div>
</footer>
</div>
</div>
<!-- Scripts -->
<script src="assets/js/jquery.min.js"></script>
<script src="assets/js/jquery.dropotron.min.js"></script>
<script src="assets/js/browser.min.js"></script>
<script src="assets/js/breakpoints.min.js"></script>
<script src="assets/js/util.js"></script>
<script src="assets/js/main.js"></script>
</body>
</html>