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<!DOCTYPE HTML>
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<article>
<h2>Publications</h2>
<h1>Pre-prints</h1>
<br>
<section>
<h1>Peer-reviewed</h1>
<section>
<div class="row">
<div class="col-10 col-12-medium">
<div class="csl-entry">
Sciarres C, Thies A, Topp CN, Eudy D, Trifunovic S, Ruiz A, Dixon PM, Miguez F, Burras LC & Archontoulis SV (2024). <b>Do newer maize hybrids grow roots faster and deeper?</b>. <i>Crop Science</i>. <a href="https://doi.org/10.1002/csc2.21208">https://doi.org/10.1002/csc2.21208</a> </div>
</div>
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<div class="__dimensions_badge_embed__" data-doi="10.1002/csc2.21208" data-style="small_circle"></div>
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<div class="csl-entry">
Wong, K.M.*, Griffiths, M.*, Moran A, Johnston, A., Liu, A.E., Sellers, M.A., & Topp, C.N. (2023). <b>Cover crop cultivars and species differ in root traits potentially impacting their selection for ecosystem services</b>. <i>Plant and Soil</i>. <a href="https://doi.org/10.1007/s11104-023-06431-7">https://doi.org/10.1007/s11104-023-06431-7</a> </div>
</div>
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<div class="__dimensions_badge_embed__" data-doi="10.1007/s11104-023-06431-7" data-style="small_circle"></div>
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<div class="csl-entry">
Griffiths, M., Liu, E.A., Gunn, S.L., Mutan, N.M., Morales, E.Y. & Topp, C.N. (2023). <b>A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions</b>. <i>Frontiers in Plant Science</i>. <a href="https://doi.org/10.3389/fpls.2023.1145389">https://doi.org/10.3389/fpls.2023.1145389</a> </div>
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<div class="__dimensions_badge_embed__" data-doi="10.3389/fpls.2023.1145389" data-style="small_circle"></div>
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<div class="col-10 col-12-medium">
<div class="csl-entry">
Czymmek, K., Duncan, K.E., & Berg, H. (2023). <b>Realizing the Full Potential of Advanced Microscopy Approaches for Interrogating Plant-Microbe Interactions</b>. <i>MPMI </i>. <a href="https://doi.org/10.1094/MPMI-10-22-0208-FI">https://doi.org/10.1094/MPMI-10-22-0208-FI</a> </div>
</div>
<div class="col-1 col-12-medium">
<div class="__dimensions_badge_embed__" data-doi="10.1093/plphys/kiad079" data-style="small_circle"></div>
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<div class="col-10 col-12-medium">
<div class="csl-entry">
Yu, Y., Beyene, G., Villmer, J., Duncan, K.E., Hu, Hao., Johnson, T., Doust, A.N., Taylor, N.J., & Kellogg, E.A. (2023). <b>Grain shattering by cell death and fracture in Eragrostis tef</b>. <i>Plant Physiology, kiad079</i>. <a href="https://doi.org/10.1093/plphys/kiad079">https://doi.org/10.1093/plphys/kiad079</a> </div>
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<div class="__dimensions_badge_embed__" data-doi="10.1093/plphys/kiad079" data-style="small_circle"></div>
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</section>
<section>
<div class="row">
<div class="col-10 col-12-medium">
<div class="csl-entry">Duncan, K.E., & Topp, C.N. (2022). <b>Phenotyping Complex Plant Structures with a Large Format Industrial Scale High-Resolution X-Ray Tomography Instrument</b>. <i> In: Lorence, A., Medina Jimenez, K. (eds) High-Throughput Plant Phenotyping. Methods in Molecular Biology, vol 2539. Humana, New York, NY.</i>. <a href="https://doi.org/10.1007/978-1-0716-2537-8_12">https://doi.org/10.1007/978-1-0716-2537-8_12</a> </div>
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<div class="__dimensions_badge_embed__" data-doi="10.1007/978-1-0716-2537-8_12" data-style="small_circle"></div>
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</section>
<section>
<div class="row">
<div class="col-10 col-12-medium">
<div class="csl-entry">Dowd, T. G., Li, M., Bagnall, G. C., Johnston, A., & Topp, C. N. (2022). <b>Root system architecture and environmental flux analysis in mature crops using 3D root mesocosms</b>. <i>Frontiers in Plant Science</i>. <a href="https://doi.org/10.3389/fpls.2022.1041404">https://doi.org/10.3389/fpls.2022.1041404</a> </div>
</div>
<div class="col-1 col-12-medium">
<div class="__dimensions_badge_embed__" data-doi="10.3389/fpls.2022.1041404" data-style="small_circle"></div>
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</section>
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<div class="row">
<div class="col-10 col-12-medium">
<div class="csl-entry">Griffiths, M., Delory, B. M., Jawahir, V., Wong, K. M., Bagnall, G. C., Dowd, T. G., Nusinow, D. A., Miller, A. J., & Topp, C. N. (2022). <b>Optimisation of root traits to provide enhanced ecosystem services in
agricultural systems: A focus on cover crops</b>. <i>Plant, Cell &
Environment</i>. <a href="https://doi.org/10.1111/pce.14247">https://doi.org/10.1111/pce.14247</a> </div>
</div>
<div class="col-1 col-12-medium">
<div class="__dimensions_badge_embed__" data-doi="10.1111/pce.14247" data-style="small_circle"></div>
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</section>
<section>
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<div class="col-10 col-12-medium">
<div class="csl-entry">Cox Jr, K. L., Gurazada, S. G. R., Duncan, K. E., Czymmek, K. J., Topp, C. N., & Meyers, B. C. (2022). <b>Organizing your space: The
potential for integrating spatial transcriptomics and 3D imaging data in
plants</b>. <i>Plant Physiology</i>. <a href="https://doi.org/10.1093/plphys/kiab508">https://doi.org/10.1093/plphys/kiab508</a> </div>
</div>
<div class="col-1 col-12-medium">
<div class="__dimensions_badge_embed__" data-doi="10.1093/plphys/kiab508" data-style="small_circle"></div>
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<div class="col-10 col-12-medium">
<div class="csl-entry">
Bélanger, S., Berensmann, H., Baena, V., Duncan, K.E., Meyers, B.C., Narayan, K., & Czymmek, K.J. (2022). <b>A versatile enhanced freeze-substitution protocol for volume electron microscopy</b>. <i>Frontiers in Cell and Developmental Biology</i>. <a href="https://doi.org/10.3389/fcell.2022.933376">https://doi.org/10.3389/fcell.2022.933376</a> </div>
</div>
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<div class="__dimensions_badge_embed__" data-doi="10.3389/fcell.2022.933376" data-style="small_circle"></div>
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<div class="col-10 col-12-medium">
<div class="csl-entry">Duncan, K. E., Czymmek, K. J., Jiang, N., Thies, A. C., & Topp, C. N. (2021). <b>X-ray microscopy enables multiscale high-resolution 3D
imaging of plant cells, tissues, and organs</b>. <i>Plant Physiology</i>. <a href="https://doi.org/10.1093/plphys/kiab405">https://doi.org/10.1093/plphys/kiab405</a> </div>
</div>
<div class="col-1 col-12-medium">
<div class="__dimensions_badge_embed__" data-doi="10.1093/plphys/kiab405" data-style="small_circle"></div>
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</section>
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<div class="col-10 col-12-medium">
<div class="csl-entry">Bucciarelli, B., Xu, Z., Ao, S., Cao, Y., Monteros, M. J., Topp, C. N., & Samac, D. A. (2021). <b>Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.)</b>. <i>Plant Methods</i>. <a href=" https://doi.org/10.1186/s13007-021-00825-3">
https://doi.org/10.1186/s13007-021-00825-3</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1186/s13007-021-00825-3" data-style="small_circle"></div>
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<div class="csl-entry"> Symonova, O., Topp, C. N. & Edelsbrunner, H. (2015). <b>DynamicRoots: a software platform for the reconstruction and analysis of growing plant roots</b>. <i>PLOS One</i>. <a href="https://doi.org/10.1371/journal.pone.0127657">https://doi.org/10.1371/journal.pone.0127657</a></div>
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<div class="csl-entry"> Goggin, F. L., Lorence, A. & Topp, C. N. (2015). <b>Applying high-throughput phenotyping to plant–insect interactions: picturing more resistant crops</b>. <i>Current Opinion in Insect Science</i>. <a href="https://doi.org/10.1016/j.cois.2015.03.002">https://doi.org/10.1016/j.cois.2015.03.002</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1016/j.cois.2015.03.002" data-style="small_circle"></div>
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<div class="csl-entry"> Zurek, P. R., Topp, C. N. & Benfey, P. N. (2015). <b>Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture</b>. <i>Plant Physiology</i>. <a href="https://doi.org/10.1104/pp.114.251751">https://doi.org/10.1104/pp.114.251751</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1104/pp.114.251751" data-style="small_circle"></div>
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<div class="csl-entry"> Chitwood, D. H. & Topp, C. N. (2015). <b>Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits</b>. <i>Current Opinion in Plant Biology</i>. <a href="https://doi.org/10.1016/j.pbi.2015.01.009">https://doi.org/10.1016/j.pbi.2015.01.009</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1016/j.pbi.2015.01.009" data-style="small_circle"></div>
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<div class="csl-entry"> Topp, C. N., Iyer-Pascuzzi, A. S., Anderson, J. T., Lee, C. R., ... & Benfey, P. N. (2013). <b>3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture</b>. <i>Proceedings of the National Academy of Sciences</i>. <a href="https://doi.org/10.1073/pnas.1304354110">https://doi.org/10.1073/pnas.1304354110</a></div>
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<div class="csl-entry"> Galkovskyi, T., Mileyko, Y., Bucksch, A., Moore, B., Symonova, O., Price, C. A., Topp, C. N., ... Benfey, P. N. & Weitz, J. S. (2012). <b>GiA Roots: software for the high throughput analysis of plant root system architecture</b>. <i>BMC Plant Biology</i>. <a href="https://doi.org/10.1186/1471-2229-12-116">https://doi.org/10.1186/1471-2229-12-116</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1186/1471-2229-12-116" data-style="small_circle"></div>
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<div class="csl-entry"> Topp, C. N. & Benfey, P. N. (2012). <b>Growth control of root architecture</b>. <i>Plant Biotechnology and Agriculture</i>. <a href="https://doi.org/10.1016/B978-0-12-381466-1.00024-9">https://doi.org/10.1016/B978-0-12-381466-1.00024-9</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1016/B978-0-12-381466-1.00024-9" data-style="small_circle"></div>
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<div class="csl-entry"> Li, W., Topp, C. N. & Dawe, R. K. (2012). <b>Maize antibody procedures: Immunolocalization and chromatin immunoprecipitation</b>. <i>Plant Cytogenetics</i>. <a href="https://doi.org/10.1007/978-0-387-70869-0_11">https://doi.org/10.1007/978-0-387-70869-0_11</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1007/978-0-387-70869-0_11" data-style="small_circle"></div>
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<div class="csl-entry"> Gent, J. I., Schneider, K. L., Topp, C. N., Rodriguez, C., Presting, G. G. & Dawe, R. K. (2012). <b>Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning</b>. <i>Epigenetics & Chromatin</i>. <a href="https://doi.org/10.1186/1756-8935-4-3">https://doi.org/10.1186/1756-8935-4-3</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1186/1756-8935-4-3" data-style="small_circle"></div>
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<div class="csl-entry"> Du, Y., Topp, C. N. & Dawe, R. K. (2010). <b>DNA binding of centromere protein C (CENPC) is stabilized by single-stranded RNA</b>. <i>PLoS Genetics</i>. <a href="https://doi.org/10.1371/journal.pgen.1000835">https://doi.org/10.1371/journal.pgen.1000835</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1371/journal.pgen.1000835" data-style="small_circle"></div>
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<div class="csl-entry"> Topp, C. N., Okagaki, R. J., Melo, J. R., Kynast, R. G., Phillips, R. L. & Dawe, R. K. (2009). <b>Identification of a maize neocentromere in an oat-maize addition line</b>. <i>Cytogenetic and Genome Research</i>. <a href="https://doi.org/10.1159/000218128">https://doi.org/10.1159/000218128</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1159/000218128" data-style="small_circle"></div>
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<div class="csl-entry"> Phan, B. H., Jin, W., Topp, C. N., Zhong, C. X., Jiang, J., Dawe, R. K., & Parrott, W. A. (2009). <b>Transformation of rice with long DNA-segments consisting of random genomic DNA or centromere-specific DNA</b>. <i>Transgenic Research</i>. <a href="https://doi.org/10.1007/s11248-006-9041-3">https://doi.org/10.1007/s11248-006-9041-3</a></div>
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<div class="csl-entry"> Deal, R. B., Topp, C. N., McKinney, E. C., & Meagher R. B. (2007). <b>Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z</b>. <i>The Plant Cell</i>. <a href="https://doi.org/10.1105/tpc.106.048447">https://doi.org/10.1105/tpc.106.048447</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1105/tpc.106.048447" data-style="small_circle"></div>
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<div class="csl-entry"> Topp, C. N. & Dawe R. K. (2006). <b>Reinterpreting pericentromeric heterochromatin</b>. <i>Current Opinion in Plant Biology</i>. <a href="https://doi.org/10.1016/j.pbi.2006.09.008">https://doi.org/10.1016/j.pbi.2006.09.008</a></div>
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<div class="__dimensions_badge_embed__" data-doi="10.1016/j.pbi.2006.09.008" data-style="small_circle"></div>
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<div class="csl-entry"> Topp, C. N., Zhong, C. X. & Dawe R. K. (2004). <b>Centromere-encoded RNAs are integral components of the maize kinetochore</b>. <i>Proceedings of the National Academy of Sciences</i>. <a href="https://doi.org/10.1073/pnas.0407154101">https://doi.org/10.1073/pnas.0407154101</a></div>
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<div class="csl-entry"> Zhong, C. X., Marshall, J. B., Topp, C. N., Mroczek, R., Kato, A., Nagaki, K., Birchler, J. A., Jiang, J. & Dawe R. K. (2002). <b>Centromeric retroelements and satellites interact with maize kinetochore protein CENH3</b>. <i>The Plant Cell</i>. <a href="https://doi.org/10.1105/tpc.006106">https://doi.org/10.1105/tpc.006106</a></div>
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<div class="csl-entry"> Topp, C. N., Ruiz-Herrera, J., Martínez-Espinoza, A. D. & Gold, S. E. (2002). <b>Integration of the gene for carboxin resistance does not impact the Ustilago maydis–maize interaction</b>. <i>Current Microbiology</i>. <a href="https://doi.org/10.1007/s00284-001-0076-7">https://doi.org/10.1007/s00284-001-0076-7</a></div>
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