Skip to content

Error: invalid alleles found in BIM file #9

@zoeward-nz

Description

@zoeward-nz

I am using Illumina GSA-24v3-0 chip and have followed the tutorial to make the SNPTable.
When I try to run convert_bim.pl with -intype top (which I believe it is)
I get the Error:
invalid alleles found in BIM file (the -intype of 'top' indicates possible alleles as ACGT0): <0 rs111033319 0 0 0 D>

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions