metaLINCS/DESCRIPTION at main · bigomics/metaLINCS · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
Package: metaLINCS
Title: Meta-analysis of LINCS L1000 drug signatures using stratified connectivity mapping
Version: 0.9.0
Authors@R: c(
    person("Ivo", "Kwee", , "kwee@bigomics.ch", role = "aut",
           comment = c(ORCID = "0000-0002-2751-4218")),
    person("Layal", "Abo Khayal", , "layal.abo.khayal@gmail.com", role = "cre")
  )
Description: 'metaLINCS' calculates and visualises correlation between
    experimental gene expression profiles with pertubation signatures from
    the LINCS L1000 project that has collected gene expression profiles
    for thousands of perturbagens at a variety of time points, doses, and
    cell lines.
License: GPL (>= 3)
URL: https://github.com/bigomics/metaLINCS
BugReports: https://github.com/bigomics/metaLINCS/issues
Depends:
    R (>= 3.5.0)
Imports:
    corrplot,
    fgsea,
    gplots,
    graphics,
    Matrix,
    qlcMatrix,
    stats,
    utils,
    uwot
Suggests:
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder:
    knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
LazyDataCompression: bzip2
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0