Cannot find query.csv

[JaerongA]

Bug Report

Description

In 07-downstream-analysis.ipynb, running the cell with from workflow_array_ephys.localization import coordinate_framework as ccf yields the following error.

Error stack

FileNotFoundError                         Traceback (most recent call last)
Cell In[4], line 1
----> 1 from workflow_array_ephys.localization import coordinate_framework as ccf

File [c:\Users\jaero\Desktop\workflow-array-ephys\workflow_array_ephys\localization.py:52](file:///C:/Users/jaero/Desktop/workflow-array-ephys/workflow_array_ephys/localization.py:52)
     45 electrode_localization.activate(
     46     db_prefix + "electrode_localization", db_prefix + "ccf", linking_module=__name__
     47 )
     49 nrrd_filepath = find_full_path(
     50     get_ephys_root_data_dir(), f"annotation_{voxel_resolution}.nrrd"
     51 )
---> 52 ontology_csv_filepath = find_full_path(get_ephys_root_data_dir(), "query.csv")
     54 if (
     55     not (coordinate_framework.CCF & {"ccf_id": ccf_id})
     56     and nrrd_filepath.exists()
     57     and ontology_csv_filepath.exists()
     58 ):
     59     coordinate_framework.load_ccf_annotation(
     60         ccf_id=ccf_id,
     61         version_name="ccf_2017",
   (...)
     64         ontology_csv_filepath=ontology_csv_filepath,
     65     )
...
     43     "No valid full-path found (from {})"
     44     " for {}".format(root_directories, relative_path)
     45 )

FileNotFoundError: No valid full-path found (from [WindowsPath('[C:/Users/jaero/Desktop/Data/workflow_array_ephys](file:///C:/Users/jaero/Desktop/Data/workflow_array_ephys)')]) for query.csv

Additional Research and Context

Add any additional research or context that was conducted in creating this report.

It expects query.csv, which is not present in the link provided (http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2017/)