diff --git a/.copier-answers.yml b/.copier-answers.yml
index 5743335a..e8de2028 100644
--- a/.copier-answers.yml
+++ b/.copier-answers.yml
@@ -1,6 +1,6 @@
 # WARNING: Do not edit this file manually.
 # Any changes will be overwritten by Copier.
-_commit: v0.10.1-41-g508666e
+_commit: v0.11.3
 _src_path: gh:easyscience/templates
 app_docs_url: https://easyscience.github.io/dynamics-app
 app_doi: 10.5281/zenodo.18877180
diff --git a/.github/actions/download-artifact/action.yml b/.github/actions/download-artifact/action.yml
index e4fd62f5..d1fff1a0 100644
--- a/.github/actions/download-artifact/action.yml
+++ b/.github/actions/download-artifact/action.yml
@@ -1,5 +1,5 @@
 name: 'Download artifact'
-description: 'Generic wrapper for actions/download-artifact'
+description: 'Wrapper for actions/download-artifact'
 inputs:
   name:
     description: 'Name of the artifact to download'
@@ -39,7 +39,7 @@ runs:
   using: 'composite'
   steps:
     - name: Download artifact
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v8
       with:
         name: ${{ inputs.name }}
         path: ${{ inputs.path }}
diff --git a/.github/actions/github-script/action.yml b/.github/actions/github-script/action.yml
index ab32da56..50de89b7 100644
--- a/.github/actions/github-script/action.yml
+++ b/.github/actions/github-script/action.yml
@@ -13,7 +13,7 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - uses: actions/github-script@v8
+    - uses: actions/github-script@v9
       with:
         script: ${{ inputs.script }}
         github-token: ${{ inputs.github-token }}
diff --git a/.github/actions/setup-easyscience-bot/action.yml b/.github/actions/setup-easyscience-bot/action.yml
index 4b28eaf8..e51eb01a 100644
--- a/.github/actions/setup-easyscience-bot/action.yml
+++ b/.github/actions/setup-easyscience-bot/action.yml
@@ -22,9 +22,9 @@ runs:
   steps:
     - name: Create GitHub App installation token
       id: app-token
-      uses: actions/create-github-app-token@v2
+      uses: actions/create-github-app-token@v3
       with:
-        app-id: ${{ inputs.app-id }}
+        client-id: ${{ inputs.app-id }}
         private-key: ${{ inputs.private-key }}
         repositories: ${{ inputs.repositories }}
 
diff --git a/.github/actions/setup-pixi/action.yml b/.github/actions/setup-pixi/action.yml
index 167ee623..dc3232c6 100644
--- a/.github/actions/setup-pixi/action.yml
+++ b/.github/actions/setup-pixi/action.yml
@@ -1,5 +1,5 @@
 name: 'Setup Pixi Environment'
-description: 'Sets up pixi with common configuration'
+description: 'Wrapper for prefix-dev/setup-pixi'
 inputs:
   environments:
     description: 'Pixi environments to setup'
@@ -33,7 +33,7 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - uses: prefix-dev/setup-pixi@v0.9.4
+    - uses: prefix-dev/setup-pixi@v0.9.5
       with:
         environments: ${{ inputs.environments }}
         activate-environment: ${{ inputs.activate-environment }}
diff --git a/.github/actions/upload-artifact/action.yml b/.github/actions/upload-artifact/action.yml
index 825ac396..fe8e4680 100644
--- a/.github/actions/upload-artifact/action.yml
+++ b/.github/actions/upload-artifact/action.yml
@@ -1,5 +1,5 @@
 name: 'Upload artifact'
-description: 'Generic wrapper for actions/upload-artifact'
+description: 'Wrapper for actions/upload-artifact'
 inputs:
   name:
     description: 'Artifact name'
@@ -38,7 +38,7 @@ runs:
   using: 'composite'
   steps:
     - name: Upload artifact
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: ${{ inputs.name }}
         path: ${{ inputs.path }}
diff --git a/.github/actions/upload-codecov/action.yml b/.github/actions/upload-codecov/action.yml
index 37d6298a..0cb15d1f 100644
--- a/.github/actions/upload-codecov/action.yml
+++ b/.github/actions/upload-codecov/action.yml
@@ -1,5 +1,5 @@
 name: 'Upload coverage to Codecov'
-description: 'Generic wrapper for codecov/codecov-action@v5'
+description: 'Wrapper for codecov/codecov-action'
 
 inputs:
   name:
@@ -32,7 +32,7 @@ inputs:
 runs:
   using: composite
   steps:
-    - uses: codecov/codecov-action@v5
+    - uses: codecov/codecov-action@v6
       with:
         name: ${{ inputs.name }}
         flags: ${{ inputs.flags }}
diff --git a/.github/scripts/publish-dashboard.sh b/.github/scripts/publish-dashboard.sh
new file mode 100644
index 00000000..dcbd0b32
--- /dev/null
+++ b/.github/scripts/publish-dashboard.sh
@@ -0,0 +1,77 @@
+#!/usr/bin/env bash
+
+set -euo pipefail
+
+remote_repository="${DASHBOARD_REMOTE_REPOSITORY:?}"
+publish_branch="${DASHBOARD_PUBLISH_BRANCH:-master}"
+source_dir="${DASHBOARD_SOURCE_DIR:?}"
+token="${DASHBOARD_TOKEN:?}"
+git_user_name="${DASHBOARD_GIT_USER_NAME:-easyscience[bot]}"
+git_user_email="${DASHBOARD_GIT_USER_EMAIL:?}"
+commit_message="${DASHBOARD_COMMIT_MESSAGE:?}"
+max_attempts="${DASHBOARD_PUSH_ATTEMPTS:-3}"
+delay_seconds="${DASHBOARD_PUSH_DELAY_SECONDS:-15}"
+
+workspace_dir="$(mktemp -d)"
+repo_dir="${workspace_dir}/dashboard"
+remote_url="https://x-access-token:${token}@github.com/${remote_repository}.git"
+
+cleanup() {
+  rm -rf "${workspace_dir}"
+}
+
+prepare_worktree() {
+  if [[ ! -d "${repo_dir}/.git" ]]; then
+    git clone --branch "${publish_branch}" --depth 1 "${remote_url}" "${repo_dir}"
+  else
+    git -C "${repo_dir}" fetch origin "${publish_branch}"
+    git -C "${repo_dir}" checkout "${publish_branch}"
+    git -C "${repo_dir}" reset --hard "origin/${publish_branch}"
+    git -C "${repo_dir}" clean -fd
+  fi
+
+  git -C "${repo_dir}" config user.name "${git_user_name}"
+  git -C "${repo_dir}" config user.email "${git_user_email}"
+}
+
+sync_publish_dir() {
+  cp -R "${source_dir}/." "${repo_dir}/"
+  git -C "${repo_dir}" add .
+
+  if git -C "${repo_dir}" diff --cached --quiet; then
+    return 1
+  fi
+
+  git -C "${repo_dir}" commit -m "${commit_message}"
+}
+
+trap cleanup EXIT
+
+prepare_worktree
+
+if ! sync_publish_dir; then
+  echo "No dashboard changes to publish."
+  exit 0
+fi
+
+for ((attempt = 1; attempt <= max_attempts; attempt += 1)); do
+  if git -C "${repo_dir}" push origin "HEAD:${publish_branch}"; then
+    echo "Dashboard published on attempt ${attempt}."
+    exit 0
+  fi
+
+  if ((attempt == max_attempts)); then
+    echo "Dashboard publish failed after ${max_attempts} attempts." >&2
+    exit 1
+  fi
+
+  echo "Dashboard push attempt ${attempt} failed. Retrying in ${delay_seconds}s." >&2
+  sleep "${delay_seconds}"
+
+  prepare_worktree
+
+  if ! sync_publish_dir; then
+    echo "Dashboard changes already exist in the target repository."
+    exit 0
+  fi
+done
\ No newline at end of file
diff --git a/.github/workflows/backmerge.yml b/.github/workflows/backmerge.yml
index 47b3384a..36ce6f54 100644
--- a/.github/workflows/backmerge.yml
+++ b/.github/workflows/backmerge.yml
@@ -27,7 +27,7 @@ jobs:
 
     steps:
       - name: Checkout repository (for local actions)
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Setup easyscience[bot]
         id: bot
@@ -38,7 +38,7 @@ jobs:
           repositories: ${{ github.event.repository.name }}
 
       - name: Checkout repository (with bot token)
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           token: ${{ steps.bot.outputs.token }}
diff --git a/.github/workflows/cleanup.yml b/.github/workflows/cleanup.yml
index 7305679b..21c72b38 100644
--- a/.github/workflows/cleanup.yml
+++ b/.github/workflows/cleanup.yml
@@ -15,11 +15,11 @@ on:
       days:
         description: 'Number of days.'
         required: true
-        default: 30
+        default: '30'
       minimum_runs:
         description: 'The minimum runs to keep for each workflow.'
         required: true
-        default: 6
+        default: '6'
       delete_workflow_pattern:
         description:
           'The name or filename of the workflow. if not set then it will target all
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
index e1e44d41..d96e5b87 100644
--- a/.github/workflows/coverage.yml
+++ b/.github/workflows/coverage.yml
@@ -5,8 +5,6 @@ on:
   push:
     branches:
       - develop
-    # Do not run on version tags (those are handled by other workflows)
-    tags-ignore: ['v*']
   # Trigger the workflow on pull request
   pull_request:
   # Allows you to run this workflow manually from the Actions tab
@@ -34,7 +32,7 @@ jobs:
 
     steps:
       - name: Check-out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
@@ -48,7 +46,7 @@ jobs:
 
     steps:
       - name: Check-out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
@@ -71,7 +69,7 @@ jobs:
 
     steps:
       - name: Check-out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
diff --git a/.github/workflows/dashboard.yml b/.github/workflows/dashboard.yml
index df89dfb7..9d1f2b0b 100644
--- a/.github/workflows/dashboard.yml
+++ b/.github/workflows/dashboard.yml
@@ -7,6 +7,10 @@ on:
 permissions:
   contents: read
 
+concurrency:
+  group: dashboard-publish-${{ github.repository }}
+  cancel-in-progress: false
+
 # Set the environment variables to be used in all jobs defined in this workflow
 env:
   CI_BRANCH: ${{ github.head_ref || github.ref_name }}
@@ -21,7 +25,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
@@ -44,19 +48,18 @@ jobs:
 
             git worktree add ../$BRANCH origin/$BRANCH
             mkdir -p reports/$BRANCH
-            CODE_PATH="../$BRANCH/src"
 
             echo "Docstring coverage for branch $BRANCH"
-            pixi run interrogate -c pyproject.toml --fail-under=0 $CODE_PATH > reports/$BRANCH/coverage-docstring.txt
+            pixi run interrogate -c pyproject.toml --fail-under=0 ../$BRANCH/src > reports/$BRANCH/coverage-docstring.txt
 
             echo "Cyclomatic complexity for branch $BRANCH"
-            pixi run radon cc -s -j $CODE_PATH > reports/$BRANCH/cyclomatic-complexity.json
+            pixi run radon cc -s -j ../$BRANCH/src > reports/$BRANCH/cyclomatic-complexity.json
 
             echo "Maintainability index for branch $BRANCH"
-            pixi run radon mi -j $CODE_PATH > reports/$BRANCH/maintainability-index.json
+            pixi run radon mi -j ../$BRANCH/src > reports/$BRANCH/maintainability-index.json
 
             echo "Raw metrics for branch $BRANCH"
-            pixi run radon raw -s -j $CODE_PATH > reports/$BRANCH/raw-metrics.json
+            pixi run radon raw -s -j ../$BRANCH/src > reports/$BRANCH/raw-metrics.json
           done
 
       - name: Generate dashboard HTML
@@ -82,22 +85,25 @@ jobs:
             ${{ github.event.repository.name }}
             dashboard
 
-      # Publish to external dashboard repository with retry logic.
+      # Push to external dashboard repository with retry logic.
       # Retry is needed to handle transient GitHub API/authentication issues
       # that occasionally cause 403 errors when multiple workflows push concurrently.
       # Uses personal_token (not github_token) as GITHUB_TOKEN cannot access external repos.
-      - name: Publish to main branch of ${{ github.repository }}
-        uses: Wandalen/wretry.action@v3.8.0
-        with:
-          attempt_limit: 3
-          attempt_delay: 15000 # 15 seconds between retries
-          action: peaceiris/actions-gh-pages@v4
-          with: |
-            publish_dir: ./_dashboard_publish
-            keep_files: true
-            external_repository: ${{ env.REPO_OWNER }}/dashboard
-            publish_branch: master
-            personal_token: ${{ steps.bot.outputs.token }}
+      - name:
+          Push to ${{ env.REPO_OWNER }}/dashboard/${{ env.REPO_NAME }}/${{ env.CI_BRANCH
+          }}
+        shell: bash
+        env:
+          DASHBOARD_COMMIT_MESSAGE: ${{ env.CI_BRANCH }}
+          DASHBOARD_GIT_USER_EMAIL:
+            ${{ vars.EASYSCIENCE_APP_ID }}+easyscience[bot]@users.noreply.github.com
+          DASHBOARD_PUSH_ATTEMPTS: '3'
+          DASHBOARD_PUSH_DELAY_SECONDS: '15'
+          DASHBOARD_PUBLISH_BRANCH: master
+          DASHBOARD_REMOTE_REPOSITORY: ${{ env.REPO_OWNER }}/dashboard
+          DASHBOARD_SOURCE_DIR: ./_dashboard_publish
+          DASHBOARD_TOKEN: ${{ steps.bot.outputs.token }}
+        run: bash ./.github/scripts/publish-dashboard.sh
 
       - name: Add dashboard link to summary
         run: |
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 52ccd8e2..2f1a413e 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -27,12 +27,16 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
-# Allow only one concurrent deployment to gh-pages at a time.
-# All docs workflows share the same concurrency group to prevent race conditions
-# when multiple branches/tags trigger simultaneous deployments.
+# - Non-tagged pushes and pull requests all use `docs-dev` group, so
+#   they cancel each other.
+# - Tagged pushes use their own group like docs-v1.2.3, so they do not
+#   cancel non-tagged runs, and non-tagged runs do not cancel them.
 concurrency:
-  group: docs-gh-pages-deploy
-  cancel-in-progress: false
+  group: >-
+    ${{ startsWith(github.ref, 'refs/tags/v')
+      && format('docs-{0}', github.ref_name)
+      || 'docs-dev' }}
+  cancel-in-progress: true
 
 # Set the environment variables to be used in all jobs defined in this workflow
 env:
@@ -83,7 +87,7 @@ jobs:
       # Check out the repository source code.
       # Note: The gh-pages branch is fetched separately later for mike deployment.
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       # Activate dark mode to create documentation with Plotly charts in dark mode
       # Need a better solution to automatically switch the chart colour theme based on the mkdocs material switcher
diff --git a/.github/workflows/issues-labels.yml b/.github/workflows/issues-labels.yml
index df3c55f1..4fbf4fab 100644
--- a/.github/workflows/issues-labels.yml
+++ b/.github/workflows/issues-labels.yml
@@ -1,6 +1,5 @@
-# Verifies if an issue has at least one of the `[scope]` and one of the
-# `[priority]` labels. If not, the bot adds labels with a warning emoji
-# to indicate that those labels need to be added.
+# Verifies if the current issue has at least one `[scope]` label and one
+# `[priority]` label. If either is missing, the workflow adds a reminder label.
 
 name: Issue labels check
 
@@ -13,8 +12,6 @@ permissions:
 
 jobs:
   check-labels:
-    if: github.actor != 'easyscience[bot]'
-
     runs-on: ubuntu-latest
 
     concurrency:
@@ -22,30 +19,22 @@ jobs:
       cancel-in-progress: true
 
     steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-
-      - name: Setup easyscience[bot]
-        id: bot
-        uses: ./.github/actions/setup-easyscience-bot
+      - name: Ensure [scope] label
+        uses: Rindrics/expect-label-prefix@v1.2.1
         with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
-
-      - name: Check for required [scope] label
-        uses: trstringer/require-label-prefix@v1
-        with:
-          secret: ${{ steps.bot.outputs.token }}
-          prefix: '[scope]'
-          labelSeparator: ' '
-          addLabel: true
-          defaultLabel: '[scope] ⚠️ label needed'
-
-      - name: Check for required [priority] label
-        uses: trstringer/require-label-prefix@v1
+          repository_full_name: ${{ github.repository }}
+          token: ${{ github.token }}
+          label_prefix: '[scope]'
+          label_separator: ' '
+          add_label: 'true'
+          default_label: '[scope] ⚠️ label needed'
+
+      - name: Ensure [priority] label
+        uses: Rindrics/expect-label-prefix@v1.2.1
         with:
-          secret: ${{ steps.bot.outputs.token }}
-          prefix: '[priority]'
-          labelSeparator: ' '
-          addLabel: true
-          defaultLabel: '[priority] ⚠️ label needed'
+          repository_full_name: ${{ github.repository }}
+          token: ${{ github.token }}
+          label_prefix: '[priority]'
+          label_separator: ' '
+          add_label: 'true'
+          default_label: '[priority] ⚠️ label needed'
diff --git a/.github/workflows/lint-format.yml b/.github/workflows/lint-format.yml
index f1135fa5..16dd95c9 100644
--- a/.github/workflows/lint-format.yml
+++ b/.github/workflows/lint-format.yml
@@ -41,7 +41,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
diff --git a/.github/workflows/pr-labels.yml b/.github/workflows/pr-labels.yml
index 642cd318..fcb8a78c 100644
--- a/.github/workflows/pr-labels.yml
+++ b/.github/workflows/pr-labels.yml
@@ -1,14 +1,9 @@
 # Verifies if a pull request has at least one label from a set of valid
 # labels before it can be merged.
 #
-# NOTE:
-# This workflow may be triggered twice in quick succession when a PR is
-# created:
-#   1) `opened`  — when the pull request is initially created
-#   2) `labeled` — if labels are added immediately after creation
-# (e.g. by manual labeling, another workflow, or GitHub App).
-#
-# These are separate GitHub events, so two workflow runs can be started.
+# The label validation is delegated to `mheap/github-action-required-labels`,
+# which checks the current PR labels via the GitHub API and can add or update a
+# PR comment when the required label set is missing.
 
 name: PR labels check
 
@@ -17,40 +12,34 @@ on:
     types: [opened, labeled, unlabeled, synchronize]
 
 permissions:
-  pull-requests: read
+  issues: write
+  pull-requests: write
 
 jobs:
   check-labels:
     runs-on: ubuntu-latest
 
     steps:
-      - name: Check for valid labels
-        run: |
-          PR_LABELS=$(echo '${{ toJson(github.event.pull_request.labels.*.name) }}' | jq -r '.[]')
-
-          echo "Current PR labels: $PR_LABELS"
-          VALID_LABELS=(
-            "[bot] release"
-            "[scope] bug"
-            "[scope] documentation"
-            "[scope] enhancement"
-            "[scope] maintenance"
-            "[scope] significant"
-          )
-
-          found=false
-          for label in "${VALID_LABELS[@]}"; do
-            if echo "$PR_LABELS" | grep -Fxq "$label"; then
-              echo "✅ Found valid label: $label"
-              found=true
-              break
-            fi
-          done
-
-          if [ "$found" = false ]; then
-            echo "ERROR: PR must have at least one of the following labels:"
-            for label in "${VALID_LABELS[@]}"; do
-              echo "       - $label"
-            done
-            exit 1
-          fi
+      - name: Checkout repository
+        uses: actions/checkout@v6
+
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+
+      - uses: mheap/github-action-required-labels@v5
+        with:
+          token: ${{ steps.bot.outputs.token }}
+          add_comment: true
+          mode: minimum
+          count: 1
+          labels: |
+            [bot] release
+            [scope] bug
+            [scope] documentation
+            [scope] enhancement
+            [scope] maintenance
+            [scope] significant
diff --git a/.github/workflows/pypi-publish.yml b/.github/workflows/pypi-publish.yml
index 4839c4d1..37a60e01 100644
--- a/.github/workflows/pypi-publish.yml
+++ b/.github/workflows/pypi-publish.yml
@@ -20,7 +20,7 @@ jobs:
 
     steps:
       - name: Check-out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0 # full history with tags to get the version number by versioningit
 
diff --git a/.github/workflows/pypi-test.yml b/.github/workflows/pypi-test.yml
index 7224f1e4..b9193754 100644
--- a/.github/workflows/pypi-test.yml
+++ b/.github/workflows/pypi-test.yml
@@ -32,7 +32,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
@@ -53,6 +53,10 @@ jobs:
         working-directory: easydynamics
         run: pixi add "python=3.14"
 
+      - name: Add other Conda dependencies
+        working-directory: easydynamics
+        run: pixi add gsl
+
       - name: Add easydynamics (with dev dependencies) from PyPI
         working-directory: easydynamics
         run: pixi add --pypi "easydynamics[dev]"
diff --git a/.github/workflows/release-notes.yml b/.github/workflows/release-notes.yml
index be331fe0..fc4b8fc9 100644
--- a/.github/workflows/release-notes.yml
+++ b/.github/workflows/release-notes.yml
@@ -20,7 +20,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0 # full history with tags to get the version number
 
@@ -61,7 +61,7 @@ jobs:
           GITHUB_TOKEN: ${{ steps.bot.outputs.token }}
 
       - name: Create GitHub draft release
-        uses: softprops/action-gh-release@v2
+        uses: softprops/action-gh-release@v3
         with:
           draft: true
           tag_name: ${{ steps.draft.outputs.tag_name }}
diff --git a/.github/workflows/release-pr.yml b/.github/workflows/release-pr.yml
index 7e6fda49..3fa073b9 100644
--- a/.github/workflows/release-pr.yml
+++ b/.github/workflows/release-pr.yml
@@ -30,7 +30,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout ${{ env.SOURCE_BRANCH }} branch
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: ${{ env.SOURCE_BRANCH }}
 
@@ -48,7 +48,7 @@ jobs:
           gh pr create \
             --base ${{ env.DEFAULT_BRANCH }} \
             --head ${{ env.SOURCE_BRANCH }} \
-            --title "Release: merge ${{ env.SOURCE_BRANCH }} into ${{ env.DEFAULT_BRANCH }}" \
+            --title "🎉 Release: merge ${{ env.SOURCE_BRANCH }} into ${{ env.DEFAULT_BRANCH }}" \
             --label "[bot] release" \
             --body "This PR is created automatically to trigger the release pipeline. It merges the accumulated changes from \`${{ env.SOURCE_BRANCH }}\` into \`${{ env.DEFAULT_BRANCH }}\`.
 
diff --git a/.github/workflows/security.yml b/.github/workflows/security.yml
index 9b34cccf..0f43db35 100644
--- a/.github/workflows/security.yml
+++ b/.github/workflows/security.yml
@@ -61,13 +61,13 @@ jobs:
       # focused on the active dev branch.
       - name: Checkout repository (scheduled → develop)
         if: ${{ github.event_name == 'schedule' }}
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: develop
 
       - name: Checkout repository
         if: ${{ github.event_name != 'schedule' }}
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Initialize CodeQL
         uses: github/codeql-action/init@v4
diff --git a/.github/workflows/test-trigger.yml b/.github/workflows/test-trigger.yml
index ecf6b40c..440bae3c 100644
--- a/.github/workflows/test-trigger.yml
+++ b/.github/workflows/test-trigger.yml
@@ -16,7 +16,7 @@ jobs:
 
     steps:
       - name: Checkout develop branch
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: develop
 
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 774edf78..e51ef2e2 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -80,7 +80,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
@@ -184,7 +184,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Download package (incl. extras) from previous job
         uses: ./.github/actions/download-artifact
@@ -229,10 +229,10 @@ jobs:
               exit 1
             fi
 
-            whl_url="file://$(python -c 'import os,sys; print(os.path.abspath(sys.argv[1]))' "${whl_path[0]}")"
+            whl_abs_path="$(python -c 'import os,sys; print(os.path.abspath(sys.argv[1]))' "${whl_path[0]}")"
 
-            echo "Adding easydynamics from: $whl_url"
-            pixi add --pypi "easydynamics[dev] @ ${whl_url}"
+            echo "Adding easydynamics from: $whl_abs_path"
+            pixi add --pypi "easydynamics[dev] @ ${whl_abs_path}"
 
             echo "Exiting pixi project directory"
             cd ..
diff --git a/.github/workflows/tutorial-tests-trigger.yml b/.github/workflows/tutorial-tests-trigger.yml
index 1bc27f4f..4b160d87 100644
--- a/.github/workflows/tutorial-tests-trigger.yml
+++ b/.github/workflows/tutorial-tests-trigger.yml
@@ -16,7 +16,7 @@ jobs:
 
     steps:
       - name: Checkout develop branch
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: develop
 
diff --git a/.github/workflows/tutorial-tests.yml b/.github/workflows/tutorial-tests.yml
index e976e267..a4fc940c 100644
--- a/.github/workflows/tutorial-tests.yml
+++ b/.github/workflows/tutorial-tests.yml
@@ -40,7 +40,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 168c5d97..87845da0 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -249,6 +249,12 @@ or to run only Python linting checks:
 pixi run py-lint-check
 ```
 
+To add missing license headers:
+
+```bash
+pixi run spdx-add
+```
+
 Some formatting issues can be fixed automatically:
 
 ```bash
diff --git a/docs/mkdocs.yml b/docs/mkdocs.yml
index a7e2be2b..0b97ef25 100644
--- a/docs/mkdocs.yml
+++ b/docs/mkdocs.yml
@@ -148,8 +148,10 @@ plugins:
         python:
           paths: ['src'] # Change 'src' to your actual sources directory
           options:
+            annotations_path: source
             docstring_style: numpy
-            group_by_category: false
+            group_by_category: true
+            members_order: source
             heading_level: 1
             show_root_heading: true
             show_root_full_path: false
diff --git a/pixi.lock b/pixi.lock
index 536f5e42..47a318c6 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -2,6 +2,7 @@ version: 6
 environments:
   default:
     channels:
+    - url: https://conda.anaconda.org/nodefaults/
     - url: https://conda.anaconda.org/conda-forge/
     indexes:
     - https://pypi.org/simple
@@ -81,20 +82,20 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.8.0-hecca717_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_19.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_19.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_19.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libsodium-1.0.21-h280c20c_3.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.1-h0c1763c_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_19.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.42-h5347b49_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libuv-1.51.0-hb03c661_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.2.1-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.2.2-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/mistune-3.2.1-pyhcf101f3_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/msgspec-0.21.1-py314h5bd0f2a_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/nbclient-0.10.4-pyhd8ed1ab_0.conda
@@ -131,7 +132,7 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/pyzmq-27.1.0-py312hda471dd_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.33.1-pyhcf101f3_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.0-pyhcf101f3_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/returns-0.27.0-pyhc364b38_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/rfc3339-validator-0.1.4-pyhd8ed1ab_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/rfc3986-validator-0.1.1-pyh9f0ad1d_0.tar.bz2
@@ -181,7 +182,7 @@ environments:
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       - pypi: https://files.pythonhosted.org/packages/04/5f/9ff93450ba96b09c7c2b3f81c94de31c89f92292f1380261bd7195bea4ea/contourpy-1.3.3-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl
       - pypi: https://files.pythonhosted.org/packages/98/ba/fc20faf5b2bb04615fa906f8daecfe896e6f7a56b34debd93c4a4d63e6e5/copier-9.15.0-py3-none-any.whl
-      - pypi: https://files.pythonhosted.org/packages/22/e5/06b1f88f42a5a99df42ce61208bdec3bddb3d261412874280a19796fc09c/coverage-7.13.5-cp314-cp314-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl
+      - pypi: https://files.pythonhosted.org/packages/d7/51/ec641c26e6dca1b25a7d2035ba6ecb7c884ef1a100a9e42fbe4ce4405139/coverage-7.14.0-cp314-cp314-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl
       - pypi: https://files.pythonhosted.org/packages/e7/05/c19819d5e3d95294a6f5947fb9b9629efb316b96de511b418c53d245aae6/cycler-0.12.1-py3-none-any.whl
       - pypi: https://files.pythonhosted.org/packages/f2/f2/728f041460f1b9739b85ee23b45fa5a505962ea11fd85bdbe2a02b021373/darkdetect-0.8.0-py3-none-any.whl
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       - pypi: https://files.pythonhosted.org/packages/ab/b5/36c712098e6191d1b4e349304ef73a8d06aed77e56ceaac8c0a306c7bda1/jupyterlab_widgets-3.0.16-py3-none-any.whl
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-      - pypi: https://files.pythonhosted.org/packages/16/5a/736dd2f4535dbf3bf26523f9158c011389ef88dd06ec2eef67fd744f1c7b/jupytext-1.19.1-py3-none-any.whl
+      - pypi: https://files.pythonhosted.org/packages/4c/65/b4b86e5fa07543bfbbcdc6c9f7f9f561e66a5f3539992e3009973f2b1314/jupytext-1.19.2-py3-none-any.whl
       - pypi: https://files.pythonhosted.org/packages/e7/f9/b06c934a6aa8bc91f566bd2a214fd04c30506c2d9e2b6b171953216a65b6/kiwisolver-1.5.0-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.whl
       - pypi: https://files.pythonhosted.org/packages/8a/a1/8d812e53a5da1687abb10445275d41a8b13adb781bbf7196ddbcf8d88505/lazy_loader-0.5-py3-none-any.whl
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-      - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.2.1-pyhd8ed1ab_0.conda
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 - pypi: https://files.pythonhosted.org/packages/07/c7/deb8c5e604404dbf10a3808a858946ca3547692ff6316b698945bb72177e/python_socketio-5.16.1-py3-none-any.whl
@@ -8367,7 +9014,7 @@ packages:
   license: Apache-2.0
   license_family: APACHE
   purls:
-  - pkg:pypi/tzdata?source=compressed-mapping
+  - pkg:pypi/tzdata?source=hash-mapping
   size: 146639
   timestamp: 1777068997932
 - conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.12-8_cp312.conda
@@ -8666,9 +9313,9 @@ packages:
   - pkg:pypi/referencing?source=hash-mapping
   size: 51788
   timestamp: 1760379115194
-- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.33.1-pyhcf101f3_1.conda
-  sha256: 7f2c24dd3bd3c104a1d2c9a10ead5ed6758b0976b74f972cfe9c19884ccc4241
-  md5: 9659f587a8ceacc21864260acd02fc67
+- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.0-pyhcf101f3_0.conda
+  sha256: 4487fdb341537e2df47159ed8e546add99080974c52d5b2dc2a710910619115a
+  md5: a5985537dab1ba7034b5ff4ea22e2fa9
   depends:
   - python >=3.10
   - certifi >=2023.5.7
@@ -8679,11 +9326,10 @@ packages:
   constrains:
   - chardet >=3.0.2,<8
   license: Apache-2.0
-  license_family: APACHE
   purls:
-  - pkg:pypi/requests?source=compressed-mapping
-  size: 63728
-  timestamp: 1777030058920
+  - pkg:pypi/requests?source=hash-mapping
+  size: 68658
+  timestamp: 1778534036810
 - conda: https://conda.anaconda.org/conda-forge/noarch/returns-0.27.0-pyhc364b38_0.conda
   sha256: 3b45efeae771f1a20307b36ecdb3a8911a89c05382836b50c62b0a99d8d3dfd8
   md5: da94ff04d97ec5efc42cbe5da3c43a84
@@ -9524,7 +10170,7 @@ packages:
   license: Apache-2.0
   license_family: Apache
   purls:
-  - pkg:pypi/tornado?source=compressed-mapping
+  - pkg:pypi/tornado?source=hash-mapping
   size: 859665
   timestamp: 1774358032165
 - conda: https://conda.anaconda.org/conda-forge/linux-64/tornado-6.5.5-py314h5bd0f2a_0.conda
@@ -9552,7 +10198,7 @@ packages:
   license: Apache-2.0
   license_family: Apache
   purls:
-  - pkg:pypi/tornado?source=compressed-mapping
+  - pkg:pypi/tornado?source=hash-mapping
   size: 859155
   timestamp: 1774358568476
 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/tornado-6.5.5-py314h6c2aa35_0.conda
@@ -9581,7 +10227,7 @@ packages:
   license: Apache-2.0
   license_family: Apache
   purls:
-  - pkg:pypi/tornado?source=compressed-mapping
+  - pkg:pypi/tornado?source=hash-mapping
   size: 859726
   timestamp: 1774358173994
 - conda: https://conda.anaconda.org/conda-forge/win-64/tornado-6.5.5-py314h5a2d7ad_0.conda
@@ -9608,7 +10254,7 @@ packages:
   license: BSD-3-Clause
   license_family: BSD
   purls:
-  - pkg:pypi/traitlets?source=compressed-mapping
+  - pkg:pypi/traitlets?source=hash-mapping
   size: 115165
   timestamp: 1778074251714
 - pypi: https://files.pythonhosted.org/packages/7b/e3/d81b065a2d866a33a541ac63a2a4cc5737e03ce2379ac3191c98bb8867e3/trove_classifiers-2026.5.7.17-py3-none-any.whl
@@ -9710,7 +10356,7 @@ packages:
   license: MIT
   license_family: MIT
   purls:
-  - pkg:pypi/urllib3?source=compressed-mapping
+  - pkg:pypi/urllib3?source=hash-mapping
   size: 103560
   timestamp: 1778188657149
 - pypi: https://files.pythonhosted.org/packages/b7/ee/e9c95cda829131f71a8dff5ce0406059fd16e591c074414e31ada19ba7c3/validate_pyproject-0.25-py3-none-any.whl
@@ -9829,7 +10475,7 @@ packages:
   license: MIT
   license_family: MIT
   purls:
-  - pkg:pypi/wcwidth?source=compressed-mapping
+  - pkg:pypi/wcwidth?source=hash-mapping
   size: 82917
   timestamp: 1777744489106
 - conda: https://conda.anaconda.org/conda-forge/noarch/webcolors-25.10.0-pyhd8ed1ab_0.conda
@@ -10035,7 +10681,7 @@ packages:
   license: MIT
   license_family: MIT
   purls:
-  - pkg:pypi/zipp?source=compressed-mapping
+  - pkg:pypi/zipp?source=hash-mapping
   size: 24461
   timestamp: 1776131454755
 - conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda
diff --git a/pixi.toml b/pixi.toml
index c711a178..8614cd57 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -1,27 +1,3 @@
-#######################
-# ENVIRONMENT VARIABLES
-#######################
-
-# Platform-independent
-
-[activation.env]
-PYTHONIOENCODING = 'utf-8'
-
-# Platform-specific
-
-# Ensures the main package is used from the source code during
-# development, even if main package is installed in editable mode
-# via uv. This is important because `pixi update` might replace
-# the installed version with the latest released version.
-
-# Unix/macOS
-[target.unix.activation.env]
-PYTHONPATH = "${PIXI_PROJECT_ROOT}/src${PYTHONPATH:+:${PYTHONPATH}}"
-
-# Windows
-[target.win.activation.env]
-PYTHONPATH = "${PIXI_PROJECT_ROOT}/src;%PYTHONPATH%"
-
 ###########
 # WORKSPACE
 ###########
@@ -32,41 +8,58 @@ PYTHONPATH = "${PIXI_PROJECT_ROOT}/src;%PYTHONPATH%"
 platforms = ['win-64', 'linux-64', 'osx-arm64']
 
 # Channels for fetching packages
-channels = ['conda-forge']
+channels = ['nodefaults', 'conda-forge']
 
-#####################
-# SYSTEM REQUIREMENTS
-#####################
+##########
+# FEATURES
+##########
 
-[system-requirements]
+# Default features:
 
+[activation.env]
+PYTHONIOENCODING = 'utf-8'
+
+[system-requirements]
 # Set minimum supported version for macOS to be 14.0 to ensure packages
-# like `skipp` that only have wheels for macOS 14.0+ (macosx_14_0_arm64)
+# like `scipp` that only have wheels for macOS 14.0+ (macosx_14_0_arm64)
 # are used instead of building from source. This is a workaround for
 # Pixi, see https://github.com/prefix-dev/pixi/issues/5667
 macos = '14.0'
 
-##########
-# FEATURES
-##########
+# Non-default features:
+
+# Set specific Python versions to be used in CI testing.
+
+[feature.py-min.dependencies]
+python = '3.12.*'
+
+[feature.py-max.dependencies]
+python = '3.14.*'
 
-# Default feature configuration
+# Development dependencies for local development and testing with
+# editable installations.
 
-[dependencies]
+[feature.dev.dependencies]
 nodejs = '*'      # Required for Prettier (non-Python formatting)
 jupyterlab = '*'  # Jupyter notebooks
+ipython = '*'     # Interactive Python shell
 pixi-kernel = '*' # Pixi Jupyter kernel
 
-[pypi-dependencies] # == [feature.default.pypi-dependencies]
-#pip = '*' # Native package installer
+[feature.dev.pypi-dependencies]
+pip = '*'
 easydynamics = { path = '.', editable = true, extras = ['dev'] }
 
-# Specific features: Set specific Python versions
+# User-like behavior for testing with pip-installed dependencies instead
+# of editable installations.
 
-[feature.py-min.dependencies]
-python = '3.12.*'
-[feature.py-max.dependencies]
-python = '3.14.*'
+[feature.user.dependencies]
+jupyterlab = '*'  # Jupyter notebooks
+ipython = '*'     # Interactive Python shell
+pixi-kernel = '*' # Pixi Jupyter kernel
+
+[feature.user.pypi-dependencies]
+pip = '*'
+easydynamics = '*'
 
 ##############
 # ENVIRONMENTS
@@ -76,12 +69,18 @@ python = '3.14.*'
 
 # The `default` feature is always included in all environments.
 # Additional features can be specified per environment.
-py-312-env = { features = ['py-min'] }
-py-314-env = { features = ['py-max'] }
 
-# The `default` environment is always created and includes the `default` feature.
-# It does not need to be specified explicitly unless non-default features are included.
-default = { features = ['py-max'] }
+# Specific environments for CI testing with different Python versions.
+py-312-env = { features = ['py-min', 'dev'] }
+py-314-env = { features = ['py-max', 'dev'] }
+
+# The `default` environment is developer-oriented for local development
+# and testing with editable installation of the current package.
+default = { features = ['py-max', 'dev'] }
+
+# The `user` environment allows testing with pip-installed dependencies
+# instead of editable installation of the current package.
+user = { features = ['py-max', 'user'] }
 
 #######
 # TASKS
diff --git a/tools/license_headers.py b/tools/license_headers.py
index 47d23524..f276ca1b 100644
--- a/tools/license_headers.py
+++ b/tools/license_headers.py
@@ -25,7 +25,9 @@
 
 
 def load_pyproject(repo_path: Union[str, Path]) -> dict[str, Any]:
-    """Load and return parsed ``pyproject.toml`` data for the repository."""
+    """
+    Load and return parsed ``pyproject.toml`` data for the repository.
+    """
     repo_root = find_repository_root(repo_path)
     pyproject_path = repo_root / 'pyproject.toml'
 
@@ -56,7 +58,9 @@ def get_exclude_patterns(
     exclude_values: list[str],
     exclude_from_pyproject_toml: Optional[str],
 ) -> list[str]:
-    """Return normalized exclude patterns from CLI and ``pyproject.toml``."""
+    """
+    Return normalized exclude patterns from CLI and ``pyproject.toml``.
+    """
     pyproject_data = load_pyproject(repo_path)
     patterns: list[str] = []
 
@@ -119,7 +123,9 @@ def get_file_creation_year(file_path: Union[str, Path]) -> str:
 
 
 def get_org_url(repo_path: Union[str, Path]) -> str:
-    """Return the organization URL derived from the repository source URL."""
+    """
+    Return the organization URL derived from the repository source URL.
+    """
     pyproject_data = load_pyproject(repo_path)
     repo_url = pyproject_data['project']['urls']['Source Code']
     return repo_url.rsplit('/', 1)[0]