From da7ffe6c6ef7f633f9c446f12e509f8e2fba1438 Mon Sep 17 00:00:00 2001 From: Kevin-Brockers Date: Wed, 27 May 2026 10:57:41 +0200 Subject: [PATCH 1/2] Added the new deeptools version to the changelog, I think I forgot that earlier... --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8bcf0d03..f8c7d85c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -67,6 +67,7 @@ the last release have been listed below for reference. | star | 2.6.1d | 2.7.11b | | python | 3.8.3 | 3.12.12 | | multiqc | 1.25.1 | 1.33 | +| deeptools | 3.5.5 | 3.5.6 | | | | | ## [[2.1.0](https://github.com/nf-core/chipseq/releases/tag/2.1.0)] - 2024-10-07 From 0cbc238633f0f2e3b544c33342fa8c49937041fb Mon Sep 17 00:00:00 2001 From: Kevin-Brockers Date: Wed, 27 May 2026 13:06:36 +0200 Subject: [PATCH 2/2] Pinned software versions that are reported in topics / most crucial --- modules/local/deseq2_qc/environment.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/deseq2_qc/environment.yml b/modules/local/deseq2_qc/environment.yml index e0baa7b6..c68eacfc 100644 --- a/modules/local/deseq2_qc/environment.yml +++ b/modules/local/deseq2_qc/environment.yml @@ -4,8 +4,8 @@ channels: - conda-forge - bioconda dependencies: - - conda-forge::r-base - - bioconda::bioconductor-deseq2 + - conda-forge::r-base =4.0.3 + - bioconda::bioconductor-deseq2 =1.28.0 - bioconda::bioconductor-biocparallel - bioconda::bioconductor-tximport - bioconda::bioconductor-complexheatmap