Merge pull request #121 from opencb/TASK-7883

TASK-7883 - Modify OpenCGA - CellBase dependency

Author: juanfeSanahuja

.github/workflows/pull-request-approved.yml

@@ -35,7 +35,7 @@ jobs:
   test:
     name: "Run all tests before merging"
     needs: calculate-xetabase-branch
-    uses: opencb/java-common-libs/.github/workflows/test-xetabase-workflow.yml@develop
+    uses: ./.github/workflows/test-xetabase-workflow.yml
     with:
       branch: ${{ needs.calculate-xetabase-branch.outputs.xetabase_branch }}
       task: ${{ github.event.pull_request.head.ref }}

.github/workflows/test-analysis.yml

@@ -39,4 +39,4 @@ jobs:
           check_name: "Surefire tests report"
           report_paths: './**/surefire-reports/TEST-*.xml'
           commit: '${{ github.sha }}'
-          fail_on_test_failures: true
+          fail_on_test_failures: true

.github/workflows/test-xetabase-workflow.yml

@@ -77,17 +77,6 @@ jobs:
         with:
           mongodb-version: 6.0
           mongodb-replica-set: rs-test
-      - name: K8s Tunnel MongoDB
-        run: |
-          wget https://dl.k8s.io/release/v1.28.2/bin/linux/amd64/kubectl
-          chmod +x ./kubectl
-          echo "${{ secrets.AZURE_KUBE_CONFIG }}" > admin.conf
-          ./kubectl -n cellbase-db port-forward services/cellbase-rs0-svc 27018:27017 --kubeconfig ./admin.conf &
-      - name: DockerHub login
-        uses: docker/login-action@v3
-        with:
-          username: ${{ env.DOCKER_HUB_USER }}
-          password: ${{ env.DOCKER_HUB_PASSWORD }}
       - name: Install sshpass
         run: sudo apt-get install sshpass
       - name: Add SSH Host to known_hosts
@@ -97,11 +86,11 @@ jobs:
         env:
           SSH_HOST: ${{ env.SSH_HOST }}
           SSH_PORT: ${{ env.SSH_PORT }}
-      - name: Run all OpenCB Junit tests, ie. java-common-libs, biodata, cellbase, opencga and opencga-enterprise
+      - name: Run all OpenCB Junit tests, ie. java-common-libs, biodata, opencga and opencga-enterprise
         run: |
           cd opencga-enterprise
           ln -s ../opencga opencga-home
-          ./build.sh -t -l runShortTests -b -s -T ${{ inputs.task }} -c localhost:27018 -H hdp3.1
+          ./build.sh -t -l runShortTests -b -s -T ${{ inputs.task }}
       - name: Upload reports results to Github
         uses: actions/upload-artifact@v4
         with: