mri2mesh/pyproject.toml at main · scientificcomputing/mri2mesh · GitHub

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[build-system]
requires = ["setuptools>=61.2"]
build-backend = "setuptools.build_meta"

[project]
name = "mri2mesh"
version = "0.3.0"
dependencies = ["pyvista", "numpy", "matplotlib", "nibabel", "scikit-image", "scipy", "meshio"]
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
]
description = "Tool for converting labeled MRI data to a mesh"
authors = [
    {name = "Henrik Finsberg", email = "henriknf@simula.no"},
    {name = "Marius Causemann", email = "mariusca@simula.no"},

]
license = {text = "MIT"}
keywords = ["mri", "fem", "brain", "meshing"]
urls = {Homepage = "https://github.com/scientificcomputing/mri2mesh"}


[project.readme]
file = "README.md"
content-type = "text/markdown"


[project.scripts]
mri2mesh = "mri2mesh.cli:main"

[project.optional-dependencies]
mesh = ["wildmeshing", "h5py"]
pytetwild = ["pytetwild", "h5py"]
test = ["pytest", "pytest-cov", "mri2mesh[mesh]"]
docs = ["pyvista[jupyter]", "jupyter-book<2.0", "mri2mesh[mesh]"]


[tool.setuptools]
include-package-data = true
package-dir = {"" = "src"}
zip-safe = false

[tool.setuptools.packages.find]
where = ["src"]
namespaces = false


[tool.aliases]
test = "pytest"

[tool.pytest.ini_options]
testpaths = ["tests"]


[tool.mypy]
files = ["src/mri2mesh", "tests"]
ignore_missing_imports = true
exclude = [
    "docs",
    "examples",
]

[tool.coverage.run]
omit = ["src/mri2mesh/__main__.py"]


[tool.ruff]

# Exclude a variety of commonly ignored directories.
exclude = [
    "examples",
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv",
]

# Same as Black.
line-length = 100

# Assume Python 3.10.
target-version = "py310"

[tool.ruff.lint]
# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
select = ["E", "F"]
ignore = ["E402", "E741", "E743", "E731"]

# Allow autofix for all enabled rules (when `--fix`) is provided.
fixable = ["A", "B", "C", "D", "E", "F"]
unfixable = []

# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"


[tool.ruff.lint.mccabe]
# Unlike Flake8, default to a complexity level of 10.
max-complexity = 10


[tool.bumpversion]
allow_dirty = false
commit = true
message = "Bump version: {current_version} → {new_version}"
tag = true
sign_tags = false
tag_name = "v{new_version}"
tag_message = "Bump version: {current_version} → {new_version}"
current_version = "0.3.0"


[[tool.bumpversion.files]]
filename = "pyproject.toml"
search = 'version = "{current_version}"'
replace = 'version = "{new_version}"'