stabilityselectr/_pkgdown.yml at main · stufield/stabilityselectr · GitHub

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url: https://stufield.github.io/stabilityselectr/

development:
  mode: auto

authors:
  Stu Field:
    href: https://github.com/stufield

home:
  links:
  - text: Learn more about me
    href: https://github.com/stufield

template:
  bootstrap: 5
  package: tidytemplate
  bslib:
    bg: "#202123"      # dark theme
    fg: "#B8BCC2"      # dark theme
    primary: "#0054AD"
    border-radius: 0.5rem
    btn-border-radius: 0.25rem
    base_font: {google: "Roboto"}

navbar:
  structure:
    left: [intro, reference, articles, news]
    right: [search, github]
  components:
    intro:
      text: Get Started
      href: articles/stabilityselectr.html

articles:
  - title: Getting Started
    navbar: ~
    contents:
    - stabilityselectr

  - title: Permutation Clustering
    navbar: ~
    desc: >
      Perform both progeny and stability clustering.
    contents:
    - progeny-clustering

reference:
  - title: Stability Selection
    desc: >
      Preform stability selection.
    contents:
    - stability_selection

  - title: Calculating FDR
    desc: >
      Calculate the empirical false discovery rates (FDR) via
      permutations of the `NULL` model (randomized permutations).
    contents:
    - starts_with("calc_[a-z]")

  - title: Stable Features
    desc: >
      Return the stable features at various probability thresholds.
    contents:
    - starts_with("get_[a-z]")

  - title: Plotting Routines
    desc: >
      Various plot traces of stability paths or cluster plots.
    contents:
    - starts_with("plot")

  - title: Progeny and Stability Clustering
    desc: >
      Preform progeny clustering and stability clustering.
    contents:
    - ends_with("_cluster")

  - title: Data
    desc: >
      Two data sets with clustering structure.
    contents:
    - clust_data
    - progeny_data

news:
  - one_page: true