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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 379 166

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 473 repositories
  • SPOCTT Public

    Tools, tutorials, and resources associated with the SPOCTT initiative (Scientific and Public Outreach of Cell Type Taxonomies)

    AllenInstitute/SPOCTT’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 2 0 0 Updated Apr 4, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 8 MIT 0 0 0 Updated Apr 4, 2026
  • cell_type_mapper Public

    Repository for storing prototype functionality implementations for the BKP

    AllenInstitute/cell_type_mapper’s past year of commit activity
    Python 47 9 7 2 Updated Apr 3, 2026
  • np_notebooks Public
    AllenInstitute/np_notebooks’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Apr 3, 2026
  • biorealistic-v1-model Public
    AllenInstitute/biorealistic-v1-model’s past year of commit activity
    Python 9 BSD-3-Clause 1 4 0 Updated Apr 3, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 16 BSD-3-Clause 5 102 3 Updated Apr 3, 2026
  • deep_ccf_registration Public

    Tissue slice registration to the CCF using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 3, 2026
  • ephys-analysis-tools Public

    Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.

    AllenInstitute/ephys-analysis-tools’s past year of commit activity
    Python 1 0 0 0 Updated Apr 3, 2026
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 5 4 0 0 Updated Apr 3, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 7 BSD-3-Clause 1 12 7 Updated Apr 2, 2026
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