The transcriptomics analysis for LC-NE mmanuscript.
There are three folders under ./notebooks/: snRNA, MERFISH and retrpseq corresponding to the anlaysis for each dataset.
The data can be generated from the other repo LCNE_transcriptomics_preprocessing, and after its run you need to attach the generated data asset to this repo.
plot_all_*_figs.ipynb is the main notebook that creates the main figures used in the paper. there are a few auxillary notebooks that are used mostly to generate supplemental figs.