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Pull requests: ArcInstitute/state

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Pull requests list

Aadduri/clean code
#258 opened Feb 24, 2026 by abhinadduri Collaborator Loading…
3
adds a new sort utility to order h5ad files for faster cell load
#251 opened Jan 26, 2026 by abhinadduri Collaborator Loading…
5
Store and Access HVG Gene Names in AnnData
#246 opened Dec 19, 2025 by nick-youngblut Contributor Loading…
14
feat: Added FDR threshold as a user defined option in prediction pipeline
#245 opened Dec 16, 2025 by Rive-001 Collaborator Loading…
@Rive-001
3
Add PDGrapher forward and inverse perturbation models codex
#239 opened Oct 28, 2025 by fctb12 Collaborator • Draft
Add batch token loss to validation step
#233 opened Oct 16, 2025 by fctb12 Collaborator Loading…
Add toggle to disable perturbation encoder in state transition model codex
#232 opened Oct 15, 2025 by fctb12 Collaborator • Draft
build: Add optional W&B run grouping via config
#222 opened Sep 24, 2025 by Rive-001 Collaborator Loading…
@Rive-001
[feature] heatmap functionality for transition model
#214 opened Sep 19, 2025 by dhruvji Collaborator Loading…
Fix: Update .gitignore to not exclude wandb OmegaConf config
#211 opened Sep 19, 2025 by cwognum Loading…
2
mps support for tx train
#185 opened Aug 23, 2025 by aceniccola Loading…
Vectordb upsert
#155 opened Jul 23, 2025 by nick-youngblut Contributor Loading…
Update README.md
#151 opened Jul 21, 2025 by dhruvji Collaborator Loading…
added the groupby logic to inference code
#146 opened Jul 18, 2025 by abhinadduri Collaborator Loading…
finetuning fix
#129 opened Jul 7, 2025 by dhruvji Collaborator Loading…
Update README.md
#128 opened Jul 7, 2025 by dhruvji Collaborator Loading…
Update README.md
#123 opened Jul 1, 2025 by rohankshah04 Collaborator Loading…
gene decoder bool
#122 opened Jun 30, 2025 by dhruvji Collaborator Loading…
Clean se
#94 opened Jun 23, 2025 by abhinadduri Collaborator Loading…
Removing old stuff from sets
#93 opened Jun 22, 2025 by dhruvji Collaborator Loading…
learning rate added using configure optimizers
#83 opened Jun 11, 2025 by dhruvji Collaborator Loading…
Integrating state with CellSentence Data from cell-load
#79 opened Jun 6, 2025 by sravya8 Collaborator Loading…
ProTip! What’s not been updated in a month: updated:<2026-03-17.