hierarchical_autophagy_regulation

Research compendium for the preprint "Hierarchical Regulation of Autophagy During Adipocyte Differentiation"

Setting up the docker environment

The analysis was run on a docker image based on the the latest rocker/verse. Other R packages were added to the image and were made available as an image that can be obtained and launched on any local machine running docker.

$ docker pull bcmslab/adiporeg:latest
$ docker run -it bcmslab/adiporeg:latest bash

Obtaining the source code

The source code is hosted publicly on this repository in the form of a research compendium. This includes the scripts to reproduce the figures and tables in this manuscript.

$ git clone https://github.com/BCMSLab/hierarchical_autophagy_regulation

Runing the analysis

In the directory hierarchical_autophagy_regulation, run make

$ cd hierarchical_autophagy_regulation
$ make all

Details of the R environment

The version of R that was used to perform this analysis is the 4.02 (2020-06-22) on x86\_64-pc-linux-gnu.

More

This manuscript was released as a preprint under the title Hierarchical Regulation of Autophagy During Adipocyte Differentiation