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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 12

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 105 2

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 73 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 57 14

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 296 65

Repositories

Showing 10 of 92 repositories
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot’s past year of commit activity
    Python 12 GPL-3.0 0 0 0 Updated Apr 2, 2026
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    BirolLab/ntSynt’s past year of commit activity
    Python 105 GPL-3.0 2 0 0 Updated Apr 2, 2026
  • ntHash Public

    Fast hash function for DNA/RNA sequences

    BirolLab/ntHash’s past year of commit activity
    C++ 106 MIT 15 2 3 Updated Apr 2, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl’s past year of commit activity
    HTML 2 3 4 0 Updated Apr 1, 2026
  • RAILS Public

    🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

    BirolLab/RAILS’s past year of commit activity
    Perl 27 GPL-3.0 5 0 0 Updated Apr 1, 2026
  • physlr Public

    ⛓️ Construct a Physical Map from Linked Reads

    BirolLab/physlr’s past year of commit activity
    Python 18 GPL-3.0 7 5 0 Updated Apr 1, 2026
  • ntLink Public

    Minimizer-based assembly scaffolding and mapping using long reads

    BirolLab/ntLink’s past year of commit activity
    Python 50 GPL-3.0 7 0 0 Updated Apr 1, 2026
  • ntJoin Public

    🔗Genome assembly scaffolder using minimizer graphs

    BirolLab/ntJoin’s past year of commit activity
    Python 85 GPL-3.0 13 0 0 Updated Apr 1, 2026
  • arcs Public

    🌈Scaffold genome sequence assemblies using linked or long read sequencing data

    BirolLab/arcs’s past year of commit activity
    C++ 95 GPL-3.0 14 0 0 Updated Apr 1, 2026
  • ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    BirolLab/ntEdit’s past year of commit activity
    C++ 73 GPL-3.0 10 0 1 Updated Apr 1, 2026
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