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73 changes: 52 additions & 21 deletions httomolibgpu/misc/morph.py
Original file line number Diff line number Diff line change
Expand Up @@ -80,45 +80,76 @@ def sino_360_to_180(
)
__check_variable_type(overlap, [int, float], "overlap", [], methods_name)
__check_variable_type(side, [str], "side", ["left", "right"], methods_name)
__check_if_positive_nonzero(
overlap, "overlap", positive=True, nonzero=True, methods_name=methods_name
)
###################################
#
dx, dy, dz = data.shape

overlap = int(np.round(overlap))
if overlap >= dz - 1:
raise ValueError("Overlap must be less than size of the horizontal detector")
if overlap % 2 != 0:
overlap += 1

overlap_pos = abs(overlap)
if overlap_pos >= dz - 1:
raise ValueError("Overlap must be less than size of the horizontal detector")
n = dx // 2
out = cp.empty((n, dy, 2 * dz - overlap), dtype=data.dtype)

if side == "left":
weights = cp.linspace(0, 1.0, overlap, dtype=cp.float32)
out[:, :, -dz + overlap :] = data[:n, :, overlap:]
out[:, :, : dz - overlap] = data[n : 2 * n, :, overlap:][:, :, ::-1]
out[:, :, dz - overlap : dz] = (
weights * data[:n, :, :overlap]
+ (weights * data[n : 2 * n, :, :overlap])[:, :, ::-1]
)
if overlap == 0:
out[:, :, -dz:] = data[:n, :, :]
out[:, :, :dz] = data[n : 2 * n, :, :][:, :, ::-1]
return out
elif overlap < 0:
out[:, :, -dz:] = data[:n, :, :]
out[:, :, : (dz + overlap_pos)] = cp.pad(
data[n : 2 * n, :, :][:, :, ::-1],
pad_width=(
(0, 0),
(0, 0),
(0, overlap_pos),
),
mode="edge",
)
return out
else:
weights = cp.linspace(0, 1.0, overlap, dtype=cp.float32)
out[:, :, -dz + overlap :] = data[:n, :, overlap:]
out[:, :, : dz - overlap] = data[n : 2 * n, :, overlap:][:, :, ::-1]
out[:, :, dz - overlap : dz] = (
weights * data[:n, :, :overlap]
+ (weights * data[n : 2 * n, :, :overlap])[:, :, ::-1]
)
if side == "right":
weights = cp.linspace(1.0, 0, overlap, dtype=cp.float32)
out[:, :, : dz - overlap] = data[:n, :, :-overlap]
out[:, :, -dz + overlap :] = data[n : 2 * n, :, :-overlap][:, :, ::-1]
out[:, :, dz - overlap : dz] = (
weights * data[:n, :, -overlap:]
+ (weights * data[n : 2 * n, :, -overlap:])[:, :, ::-1]
)
if overlap == 0:
out[:, :, :dz] = data[:n, :, :]
out[:, :, dz::] = data[n : 2 * n, :, :][:, :, ::-1]
return out
elif overlap < 0:
out[:, :, : (dz + overlap_pos)] = cp.pad(
data[:n, :, :],
pad_width=(
(0, 0),
(0, 0),
(0, overlap_pos),
),
mode="edge",
)
out[:, :, (dz + overlap_pos) : :] = data[n : 2 * n, :, :][:, :, ::-1]
return out
else:
weights = cp.linspace(1.0, 0, overlap, dtype=cp.float32)
out[:, :, : dz - overlap] = data[:n, :, :-overlap]
out[:, :, -dz + overlap :] = data[n : 2 * n, :, :-overlap][:, :, ::-1]
out[:, :, dz - overlap : dz] = (
weights * data[:n, :, -overlap:]
+ (weights * data[n : 2 * n, :, -overlap:])[:, :, ::-1]
)

return cp.pad(
out,
pad_width=(
(0, 0),
(0, 0),
(overlap // 2, overlap // 2),
(overlap_pos // 2, overlap_pos // 2),
),
mode="edge",
)
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