Update FIB metadata parsing and registration logic

[tieneupin]

Previously, we forcibly mapped certain FIB steps to certain stage value fields. However, as Murfey's FIB workflow is run on more types of FIB datasets, we find that this hard mapping is incorrect in certain cases. Additionally, sites set up and selected outside of AutoTEM having a different naming pattern than if they were configured completely using AutoTEM.

This PR makes the metadata registration more flexible by using the latest available stage position name to perform the ISPyB and Murfey database registrations. It also updates the number extraction function to handle these additional site naming patterns

[codecov]

Codecov Report

❌ Patch coverage is 73.13433% with 18 lines in your changes missing coverage. Please review.
✅ Project coverage is 52.94%. Comparing base (95769c0) to head (f33e7e9).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #825      +/-   ##
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+ Coverage   52.90%   52.94%   +0.03%     
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  Files          99       99              
  Lines       10760    10773      +13     
  Branches     1415     1420       +5     
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+ Hits         5693     5704      +11     
  Misses       4769     4769              
- Partials      298      300       +2     

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[stephen-riggs]

Looks good to me. Does this resolve the issue which caused the current FIB dlq messages?

[tieneupin]

Does this resolve the issue which caused the current FIB dlq messages?

This will only partially address it. The 'waffle' method workflow has a very different data structure compared to the full AutoTEM workflow. It will necessitate additional logic (potentially on the FIBContext side) to fully separate the two workflows and how files from each workflow are handled.