Lots of this are shared with the ALL_BY_ALL workflow. Can we just use that here? params.multiplex is the hang up, maybe? There is some complexity and potential rework of that workflow maybe?
Originally posted by @rbdavid in #293
params.multiplex is 99% of the time always True. When would we not want to condense sequence sets before axa_blast tasks? If we remove multiplex boolean logic, we could make ALL_BY_ALL workflow a shared thing and Convergence Ratio and EST could both use it.
Originally posted by @rbdavid in #293
params.multiplexis 99% of the time always True. When would we not want to condense sequence sets before axa_blast tasks? If we remove multiplex boolean logic, we could makeALL_BY_ALLworkflow a shared thing and Convergence Ratio and EST could both use it.