build(deps): Bump the python group with 4 updates

[dependabot]

Bumps the python group with 4 updates: duckdb, fastapi, mcp and ruff.

Updates duckdb from 1.5.4 to 1.5.5

Release notes

Sourced from duckdb's releases.

v1.5.5 Bugfix Release

See DuckDB's changelog for all changes in DuckDB.

What's Changed in DuckDB-Python

• Fix numpy deprecations by @​evertlammerts in duckdb/duckdb-python#505
• Fix alias of DuckDBPyRelation.query (closes #468) by @​evertlammerts in duckdb/duckdb-python#524

Commits

• b236c81 Pin submodule to release hash
• e6a21c5 [duckdb-labs bot] Bump DuckDB submodule (#554)
• f637bf4 Bump submodule
• 4c5c73c [duckdb-labs bot] Bump DuckDB submodule (#551)
• 6fae280 Bump submodule
• d8d5f0a [duckdb-labs bot] Bump DuckDB submodule (#548)
• 5d85f06 Bump submodule
• c3cbf8d [duckdb-labs bot] Bump DuckDB submodule (#545)
• 93418b6 Bump submodule
• 24f1915 [duckdb-labs bot] Bump DuckDB submodule (#539)
• Additional commits viewable in compare view

Updates fastapi from 0.139.1 to 0.140.13

Release notes

Sourced from fastapi's releases.

0.140.13

Fixes

• 🐛 Fix status_code being ignored for SSE and JSONL streaming endpoints. PR #15937 by @​SAURABHSALVE.

Docs

• 📝 Fix format_sse_event docstring rendering of \n\n terminator. PR #15613 by @​AshNicolus.
• 📝 Add API reference page for fastapi.sse. PR #15930 by @​SAURABHSALVE.

0.140.12

Fixes

• 🐛 Fix line splitting in format_sse_event to comply with SSE spec. PR #15515 by @​Zawwarsami16.

0.140.11

Fixes

• 🐛 Fix response_model_* params ignored for non-generator endpoints with Iterable[..] return type. PR #15093 by @​YuriiMotov.

0.140.10

Fixes

• 🐛 Fix handling sequences with nested Annotated types. PR #14874 by @​YuriiMotov.

Internal

• 🐛 Accept any base test failure as regression. PR #16092 by @​tiangolo.
• 🐛 Preserve pytest exit code in regression check. PR #16091 by @​tiangolo.
• ✅ Test PR regressions against base code. PR #16090 by @​tiangolo.

0.140.9

Fixes

• 🐛 Fix exclude_defaults not propagated to dict keys and values in jsonable_encoder. PR #16043 by @​MBGrao.

Internal

• ⬆ Bump gitpython from 3.1.50 to 3.1.54. PR #16047 by @​dependabot[bot].
• ⬆ Bump pymdown-extensions from 10.21.3 to 11.0. PR #16048 by @​dependabot[bot].
• ⬆ Bump pyasn1 from 0.6.3 to 0.6.4. PR #16045 by @​dependabot[bot].

0.140.8

Fixes

• 🐛 Fix stream item type lost when using include_router(). PR #15077 by @​alex-raw.

0.140.6

Refactors

... (truncated)

Commits

• 628663f 🔖 Release version 0.140.13 (#16096)
• 0b54fd0 📝 Update release notes
• e92a0dc 🐛 Fix status_code being ignored for SSE and JSONL streaming endpoints (#15937)
• 6215d8a 📝 Update release notes
• 12242c4 📝 Fix format_sse_event docstring rendering of \n\n terminator (#15613)
• 70a8f3d 📝 Update release notes
• 4f0152c 📝 Add API reference page for fastapi.sse (#15930)
• 5f25505 🔖 Release version 0.140.12 (#16095)
• 76e2c83 📝 Update release notes
• 0f3e7bd 🐛 Fix line splitting in format_sse_event to comply with SSE spec (#15515)
• Additional commits viewable in compare view

Updates mcp from 1.28.1 to 1.29.0

Release notes

Sourced from mcp's releases.

v1.29.0

What's Changed

• [v1.x] Route Context.report_progress() to the originating request stream by @​maxisbey in modelcontextprotocol/python-sdk#2994
• [v1.x] docs: publish llms.txt and markdown renditions of the docs by @​maxisbey in modelcontextprotocol/python-sdk#3029
• [v1.x] docs: pin mkdocs<2 by @​maxisbey in modelcontextprotocol/python-sdk#3074
• [v1.x] Add Streamable HTTP request body limits by @​Kludex in modelcontextprotocol/python-sdk#3101
• [v1.x] fix: reject trailing newline in tool-name validation by @​maxisbey in modelcontextprotocol/python-sdk#3086
• [v1.x] ci: pick the docs toolchain per worktree in build-docs.sh by @​maxisbey in modelcontextprotocol/python-sdk#3082
• [v1.x] Move the v1.x docs to /v1/ and mark v1.x as the maintenance line by @​maxisbey in modelcontextprotocol/python-sdk#3177

Full Changelog: modelcontextprotocol/python-sdk@v1.28.1...v1.29.0

Commits

• 98b7159 [v1.x] Move the v1.x docs to /v1/ and mark v1.x as the maintenance line (#3177)
• c0c5a9d [v1.x] ci: pick the docs toolchain per worktree in build-docs.sh (#3082)
• e828374 [v1.x] fix: reject trailing newline in tool-name validation (#3086)
• 5f0b6af [v1.x] Add Streamable HTTP request body limits (#3101)
• ba33472 [v1.x] docs: pin mkdocs<2 (#3074)
• 0e3a604 [v1.x] docs: publish llms.txt and markdown renditions of the docs (#3029)
• 9678a3b [v1.x] Route Context.report_progress() to the originating request stream (#2994)
• See full diff in compare view

Updates ruff from 0.15.21 to 0.16.0

Release notes

Sourced from ruff's releases.

0.16.0

Release Notes

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

• Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules. Note that this is primarily an expansion, but 18 of the more opinionated pycodestyle (E) and pyflakes (F) rules have been removed from the default set: E401, E402, E701, E702, E703, E711, E712, E713, E714, E721, E731, E741, E742, E743, F403, F405, F406, and F722.

• Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

• Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

  import math  # ruff: ignore[F401]
  ruff: ignore[F401]
  import os

• Fixes are now shown in check and format --check output:

  ❯ ruff format --check .
  unformatted: File would be reformatted
   --> try.md:1:1
    |
  1 | ```python
    - import   math
  2 + import math
  3 | ```
    |
  1 file would be reformatted

  This example also shows off the Markdown formatting.

• format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

  ❯ ruff format --check --output-format github .
  ::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

  See the CLI help or documentation for the full list of supported formats.

• The filename, location, end_location, fix.edits[].location, and fix.edits[].end_location fields in the JSON output format may now be null rather than defaulting to the empty string and row 1, column 1, respectively.

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.0

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

• Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules. Note that this is primarily an expansion, but 18 of the more opinionated pycodestyle (E) and pyflakes (F) rules have been removed from the default set: E401, E402, E701, E702, E703, E711, E712, E713, E714, E721, E731, E741, E742, E743, F403, F405, F406, and F722.

• Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

• Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

  import math  # ruff: ignore[F401]
  ruff: ignore[F401]
  import os

• Fixes are now shown in check and format --check output:

  ❯ ruff format --check .
  unformatted: File would be reformatted
   --> try.md:1:1
    |
  1 | ```python
    - import   math
  2 + import math
  3 | ```
    |
  1 file would be reformatted

  This example also shows off the Markdown formatting.

• format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

... (truncated)

Commits

• a2635fd Bump 0.16.0 (#27136)
• 3433449 [ty] Reuse full call diagnostics for implicit setter calls (#27115)
• 2240070 Reflect ruff: ignore and --add-ignore stabilization in documentation (#27...
• 17ef711 Stabilize --add-ignore (#27125)
• ef912bb Add newly stabilized rules to defaults (#27055)
• b30f040 Stabilize new default rules (#27035)
• bcd70c5 Exclude Markdown files from format-dev runs (#27052)
• 87e51e2 Fix format --check spans for syntax errors (#27045)
• afe2723 [flake8-gettext] Stabilize qualified-name and built-in binding resolution (...
• a9702d8 [flake8-bandit] Stabilize string literal binding resolution (S310) (#26944)
• Additional commits viewable in compare view

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