Add functions for generating species codes and managing parquet datasets - #27
Merged
Conversation
- Implemented .generate3ltrCode to create abbreviated species names. - Added .sql_escape and .parquet_dataset_sql for SQL operations on parquet files. - Updated .register_parquet_views to register views from parquet datasets. - Refactored .parquet2Matrix and .parquet2MDRMatrix to use new functions and improve readability.
Contributor
Author
|
@amcim I have added example files in The testing example would be There is a remaining concern that it prints
even if no matrices are generated due to data unavailability/insufficiency. The return of the functions |
amcim
approved these changes
Jul 31, 2026
amcim
left a comment
Contributor
There was a problem hiding this comment.
The functioanlity of generate the matrices themselves and what you described here all works well. Approving for merge.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.