SQL Server Migration 1

snprc_ehr/module.properties

@@ -1,5 +1,5 @@
 ModuleClass: org.labkey.snprc_ehr.SNPRC_EHRModule
-SupportedDatabases: mssql
+SupportedDatabases: mssql, pgsql
 ManageVersion: true
 License: Apache 2.0
 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0

snprc_ehr/resources/queries/ehr/ProtocolLookup.sql

@@ -3,7 +3,7 @@ PARAMETERS
     newAssignmentsParm INTEGER DEFAULT 1
 )
 SELECT p.protocol AS Iacuc,
-       p.protocol + ' - ' +  RTRIM(p.inves)+ ' -' + RTRIM(p.title) AS DisplayValue,
+       p.protocol || ' - ' || RTRIM(p.inves) || ' -' || RTRIM(p.title) AS DisplayValue,
        RIGHT(p.protocol, 2) AS Species,
        p.project_type as ProjectType,
        p.sequenceNumber as SequenceNumber,

snprc_ehr/resources/queries/ehr_lookups/AcquisitionTypesLookup.sql

@@ -1,6 +1,6 @@
 SELECT a.value as AcqCode,
        a.category as Category,
-       rtrim(a.value) + ' - ' + a.description as DisplayValue,
+       rtrim(a.value) || ' - ' || a.description as DisplayValue,
        a.sort_order as SortOrder
 from ehr_lookups.AcquisitionType as a
 where a.date_disabled is null

snprc_ehr/resources/queries/ehr_lookups/AgeClassRanges.sql

@@ -20,13 +20,13 @@ SELECT
 
   -- please excuse the ugly formatting - A sql server convert function would be helpful here!
   case when (age."max" is NULL and age.label = 'Senior') then
-    (CAST(age."min" as VARCHAR(5) ) + case when (age."min"- truncate(age."min", 0) > 0)  then  '' else '.0 - ' end)
+    (CAST(age."min" as VARCHAR(5) ) || case when (age."min"- FLOOR(age."min") > 0)  then  '' else '.0 - ' end)
   ELSE
-    (CAST(age."min" as VARCHAR(5)) +
-     + case when (age."min"- truncate(age."min", 0) > 0)  then  ' - ' else '.0 - ' end
+    (CAST(age."min" as VARCHAR(5)) ||
+     case when (age."min"- FLOOR(age."min") > 0)  then  ' - ' else '.0 - ' end
 
-     + CAST(age."max" as varchar(5))
-     + case when (age."max"- truncate(age."max", 0) > 0)  then  '' else '.0' end )
+     || CAST(age."max" as varchar(5))
+     || case when (age."max"- FLOOR(age."max") > 0)  then  '' else '.0' end )
   END AS ageRange,
 
   age.gender

snprc_ehr/resources/queries/snprcApath/apath_encounters.sql

@@ -29,11 +29,11 @@ ELSE 'Completed'
 END AS QCStateLabel,
 
 CASE
-WHEN a.tissue IS NOT NULL THEN (a.tissue + '-' + b.description)
+WHEN a.tissue IS NOT NULL THEN (a.tissue || '-' || b.description)
 ELSE b.description
 END AS title
 
 FROM snprcApath.apath a INNER JOIN snprcApath.valid_accession_codes b ON a.accession_code = b.accession_code
 INNER JOIN snprcApath.valid_record_status d ON a.record_status = d.record_status
 
-WHERE a.animal_id IS NOT NULL AND COALESCE(a.biopsy, a.death) IS NOT NULL AND b.description IS NOT NULL
+WHERE a.animal_id IS NOT NULL AND COALESCE(a.biopsy, a.death) IS NOT NULL AND b.description IS NOT NULL

snprc_ehr/resources/queries/snprc_ehr/AccountLookup.sql

@@ -4,7 +4,7 @@ SELECT a.accountGroup AS AccountGroup,
        a.account AS Account,
        a.date AS StartDate,
        a.description AS Description,
-       a.account + ' - ' + rtrim(a.description) as DisplayValue
+       a.account || ' - ' || rtrim(a.description) as DisplayValue
 
 FROM snprc_ehr.validAccounts AS a
 where enddate is null and a.account <> '0000-000-00'

snprc_ehr/resources/queries/snprc_ehr/BaboonColonyGroups.sql

@@ -16,4 +16,4 @@
 SELECT ag.*
 FROM snprc_ehr.animal_groups AS ag
   INNER JOIN snprc_ehr.animal_group_categories AS agc ON ag.category_code = agc.category_code
-WHERE agc.description LIKE '%baboon colonies%' and ag.enddate is null
+WHERE lower(agc.description) LIKE '%baboon colonies%' and ag.enddate is null

snprc_ehr/resources/queries/snprc_ehr/CurrentSpeciesLookup.sql

@@ -1,6 +1,6 @@
 SELECT DISTINCT s.species_code     as SpeciesCode,
                 rtrim(sc.common_name)   as CommonName,
-                s.species_code + ' (' + rtrim(s.arc_species_code) + ') - ' + rtrim(s.scientific_name)  + '/'+ rtrim(sc.common_name) as DisplayColumn,
+                s.species_code || ' (' || rtrim(s.arc_species_code) || ') - ' || rtrim(s.scientific_name)  || '/' || rtrim(sc.common_name) as DisplayColumn,
                 s.scientific_name  as ScientificName,
                 s.arc_species_code as arcSpeciesCode
 FROM snprc_ehr.species AS s

snprc_ehr/resources/queries/snprc_ehr/ExportSndLookupSets.sql

@@ -2,9 +2,9 @@ SELECT
     SetName as LOOKUP_KEY,
     ObjectId as OBJECT_ID,
     LEFT(s.Email,
-    CASE WHEN charindex('@', s.Email) = 0
-    THEN LEN(s.Email)
-    ELSE (charindex('@', s.Email) - 1) END) as USER_NAME,
+    CASE WHEN LOCATE('@', s.Email) = 0
+    THEN LENGTH(s.Email)
+    ELSE (LOCATE('@', s.Email) - 1) END) as USER_NAME,
     ls.Modified as ENTRY_DATE_TM
 FROM
     snd.LookupSets ls

snprc_ehr/resources/queries/snprc_ehr/ExportSndLookups.sql

@@ -3,14 +3,14 @@ SELECT
     ls.SetName as LOOKUP_KEY,
     Value as VALUE,
     CASE
-        WHEN l.Displayable = 0 THEN 'Y' ELSE 'N' END as IS_HIDDEN,
+        WHEN l.Displayable = false THEN 'Y' ELSE 'N' END as IS_HIDDEN,
     l.SortOrder as ORDER_NUM,
     l.ObjectId as OBJECT_ID,
     'N' as DEFAULT_FLAG,
     LEFT(s.Email,
-	CASE WHEN charindex('@', s.Email) = 0
-	THEN LEN(s.Email)
-	ELSE (charindex('@', s.Email) - 1) END) as USER_NAME,
+	CASE WHEN LOCATE('@', s.Email) = 0
+	THEN LENGTH(s.Email)
+	ELSE (LOCATE('@', s.Email) - 1) END) as USER_NAME,
     l.Modified as ENTRY_DATE_TM
 FROM
     snd.Lookups l

snprc_ehr/resources/queries/snprc_ehr/FeeScheduleActivityIdLookup.sql

@@ -15,12 +15,13 @@
  */
 SELECT
          fs.ActivityId,
-         cast(fs.ActivityId as VARCHAR(5)) + ' - ' + fs.Description as description
+         cast(fs.ActivityId as VARCHAR(5)) || ' - ' || fs.Description as description
 
 FROM snprc_ehr.FeeSchedule AS fs
 WHERE  fs.StartingYear = YEAR(NOW())
-AND  fs.BudgetYear = YEAR(NOW())
+-- BudgetYear is VARCHAR in the schema; Postgres won't implicitly compare it to a numeric, so cast.
+AND  fs.BudgetYear = CAST(YEAR(NOW()) AS VARCHAR)
 AND fs.VersionLabel = 'Capped Fee Schedule'
 AND fs.ActivityId between 4000 and 4999
 
-order by ActivityId
+order by ActivityId

snprc_ehr/resources/queries/snprc_ehr/HL7BiochemistryPivot.sql

@@ -12,7 +12,7 @@ SELECT
 
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
 WHERE obr.PROCEDURE_ID.Dataset = 'Biochemistry'
 

snprc_ehr/resources/queries/snprc_ehr/HL7CulturePivot.sql

@@ -12,7 +12,7 @@ SELECT
 
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
 WHERE obr.PROCEDURE_ID.Dataset = 'Culture'
 

snprc_ehr/resources/queries/snprc_ehr/HL7HematologyPivot.sql

@@ -12,7 +12,7 @@ SELECT
 
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
 WHERE obr.PROCEDURE_ID.Dataset = 'Hematology'
 

snprc_ehr/resources/queries/snprc_ehr/HL7HistologyPivot.sql

@@ -12,7 +12,7 @@ SELECT obr.ANIMAL_ID as id,
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
 WHERE obr.PROCEDURE_ID.Dataset = 'Histology'
 
 GROUP BY obr.ANIMAL_ID, obr.OBSERVATION_DATE_TM, obr.MESSAGE_ID, obr.PROCEDURE_NAME, obr.SET_ID, COALESCE (lp.ServiceId.ServiceName, obr.PROCEDURE_NAME), obr.PROCEDURE_ID, nte.COMMENT, COALESCE (lp.TestName, obx.TEST_NAME)

snprc_ehr/resources/queries/snprc_ehr/HL7MiscPivot.sql

@@ -12,7 +12,7 @@ SELECT obr.ANIMAL_ID as id,
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
 WHERE obr.PROCEDURE_ID.Dataset = 'Misc Tests'
 
 GROUP BY obr.ANIMAL_ID, obr.OBSERVATION_DATE_TM, obr.MESSAGE_ID, obr.PROCEDURE_NAME, obr.SET_ID, COALESCE (lp.ServiceId.ServiceName, obr.PROCEDURE_NAME), obr.PROCEDURE_ID, nte.COMMENT, COALESCE (lp.TestName, obx.TEST_NAME)

snprc_ehr/resources/queries/snprc_ehr/HL7ParasitologyPivot.sql

@@ -12,7 +12,7 @@ SELECT obr.ANIMAL_ID as id,
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
 WHERE obr.PROCEDURE_ID.Dataset = 'Parasitology'
 
 GROUP BY obr.ANIMAL_ID, obr.OBSERVATION_DATE_TM, obr.MESSAGE_ID, obr.PROCEDURE_NAME, obr.SET_ID, COALESCE (lp.ServiceId.ServiceName, obr.PROCEDURE_NAME), obr.PROCEDURE_ID, nte.COMMENT, COALESCE (lp.TestName, obx.TEST_NAME)

snprc_ehr/resources/queries/snprc_ehr/HL7SurveillancePivotInner.sql

@@ -12,7 +12,7 @@ SELECT
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
 WHERE obr.PROCEDURE_ID.Dataset = 'Surveillance'
 
 UNION
@@ -21,12 +21,14 @@ SELECT
     b.id,
     b.date,
     b.serviceTestId.serviceId.ServiceName AS PROCEDURE_NAME,
-    b.serviceTestId.serviceId AS PROCEDURE_ID,
+    -- HL7_OBR.PROCEDURE_ID is VARCHAR but labwork_services.ServiceId is INT; cast so the UNION types match on Postgres.
+    CAST(b.serviceTestId.serviceId AS VARCHAR) AS PROCEDURE_ID,
     b.serviceTestId.testName AS TestName,
     b.remark as COMMENT,
     '' AS ABNORMAL_FLAGS,
     b.qualresult as QUALITATIVE_RESULT,
-    b.RESULT as RESULT
+    -- labworkTaqman.RESULT is DOUBLE but HL7_OBX.RESULT (first UNION branch) is TEXT; cast to VARCHAR so the UNION types match on Postgres.
+    CAST(b.RESULT AS VARCHAR) as RESULT
 FROM study.labworkTaqman b
 WHERE b.serviceTestId.includeInPanel = true and b.qcstate.publicdata = true and b.serviceTestid.ServiceId.Dataset = 'Surveillance'
 
@@ -36,11 +38,11 @@ SELECT
     b.id,
     b.date,
     b.serviceTestId.serviceId.ServiceName AS PROCEDURE_NAME,
-    b.serviceTestId.serviceId AS PROCEDURE_ID,
+    CAST(b.serviceTestId.serviceId AS VARCHAR) AS PROCEDURE_ID,
     b.serviceTestId.testName AS TestName,
     b.remark as COMMENT,
     '' AS ABNORMAL_FLAGS,
     b.qualresult as QUALITATIVE_RESULT,
-    NULL as RESULT
+    CAST(NULL AS VARCHAR) as RESULT
 FROM study.assay_labworkResults b
 WHERE b.serviceTestId.includeInPanel = true and b.qcstate.publicdata = true and b.serviceTestid.ServiceId.Dataset = 'Surveillance'

snprc_ehr/resources/queries/snprc_ehr/HL7UnknownPivot.sql

@@ -12,7 +12,7 @@ SELECT
 
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
 WHERE obr.PROCEDURE_ID.Dataset = 'Unknown'
 

snprc_ehr/resources/queries/snprc_ehr/HL7UrinalysisPivot.sql

@@ -12,7 +12,7 @@ SELECT
 
 FROM snprc_ehr.HL7_OBR obr
     LEFT OUTER JOIN snprc_ehr.HL7_OBX obx ON obr.OBJECT_ID = obx.OBR_OBJECT_ID AND obr.SET_ID = obx.OBR_SET_ID
-    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = lp.ServiceId
+    LEFT OUTER JOIN snprc_ehr.labwork_Panels AS lp on obx.TEST_ID = lp.TestId AND obr.PROCEDURE_ID = CAST(lp.ServiceId AS VARCHAR)
     LEFT OUTER JOIN snprc_ehr.HL7_GroupNTE AS nte ON obr.OBJECT_ID = nte.OBR_OBJECT_ID AND obr.SET_ID = nte.OBR_SET_ID
 WHERE obr.PROCEDURE_ID.Dataset = 'Urinalysis'
 

snprc_ehr/resources/queries/snprc_ehr/colonyGroups.sql

@@ -25,4 +25,4 @@ FROM snprc_ehr.animal_groups AS ag
       SELECT DISTINCT primate, arc_species_code
       FROM snprc_ehr.species
     ) AS s on agc.Species = s.arc_species_code
-WHERE agc.description LIKE '%colonies%'
+WHERE lower(agc.description) LIKE '%colonies%'

snprc_ehr/resources/queries/snprc_ehr/pedigreeGroups.sql

@@ -20,4 +20,4 @@ SELECT ag.category_code as Category,
        agc.Species as Species
 FROM snprc_ehr.animal_groups AS ag
          INNER JOIN snprc_ehr.animal_group_categories AS agc ON ag.category_code = agc.category_code
-WHERE agc.description LIKE '%pedigree%'
+WHERE lower(agc.description) LIKE '%pedigree%'

snprc_ehr/resources/queries/study/DailyObs.sql

@@ -29,34 +29,34 @@ SELECT o.Id,
        CASE
            WHEN o.SaNone = 'Y' THEN 'None'
            ELSE ''
-       END +
-	   CASE
+       END ||
+       CASE
            WHEN o.SaUnknown = 'Y' THEN 'Unknown'
            ELSE ''
-       END +
-	   CASE WHEN o.SaNormal = 'Y' THEN 'Normal'
+       END ||
+       CASE WHEN o.SaNormal = 'Y' THEN 'Normal'
            ELSE ''
-       END +
+       END ||
        CASE WHEN o.SaLoose = 'Y' THEN ' Loose'
-                  ELSE ''
-       END +
+           ELSE ''
+       END ||
        CASE WHEN o.SaSoft = 'Y' THEN ' Soft'
            ELSE ''
-       END +
-	   CASE WHEN o.SaWatery = 'Y' THEN ' Watery'
-            ELSE ''
-       END +
-	   CASE WHEN o.SaBloody = 'Y' THEN ' Bloody'
-            ELSE ''
-       END +
-	   CASE WHEN o.SaDry = 'Y' THEN ' Dry'
-            ELSE ''
-       END +
-	   CASE WHEN o.SaOther = 'Y' THEN ' Other'
-            ELSE ''
-       END +
-	   CASE WHEN o.SaPellet = 'Y' THEN ' Pellet'
-            ELSE ''
+       END ||
+       CASE WHEN o.SaWatery = 'Y' THEN ' Watery'
+           ELSE ''
+       END ||
+       CASE WHEN o.SaBloody = 'Y' THEN ' Bloody'
+           ELSE ''
+       END ||
+       CASE WHEN o.SaDry = 'Y' THEN ' Dry'
+           ELSE ''
+       END ||
+       CASE WHEN o.SaOther = 'Y' THEN ' Other'
+           ELSE ''
+       END ||
+       CASE WHEN o.SaPellet = 'Y' THEN ' Pellet'
+           ELSE ''
        END AS Stool,
        coalesce(o.HousingStatus.description,'NA') as Housing,
        o.taskid,

snprc_ehr/resources/queries/study/DemographicsHL7.sql

@@ -12,4 +12,4 @@ SELECT
     d.modifiedBy.DisplayName as modifiedBy,
     d.modified
 FROM demographics as d
-where len(d.id) <= 6
+where LENGTH(d.id) <= 6

snprc_ehr/resources/queries/study/DemographicsHL7DeleteSource.sql

@@ -1,5 +1,5 @@
 select
-    substring(dae.oldrecordmap, charindex('objectid=',dae.oldrecordmap, 0) + len('objectid='), 36) as objectid,
+    substring(dae.oldrecordmap, LOCATE('objectid=', dae.oldrecordmap) + LENGTH('objectid='), 36) as objectid,
     dae.date as modified
 
 from auditLog.DatasetAuditEvent as dae

snprc_ehr/resources/queries/study/R24WeightsDeletedSrc.sql

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 select
-  substring(dae.oldrecordmap, charindex('objectid=',dae.oldrecordmap, 0) + len('objectid='), 36) as objectid,
+  substring(dae.oldrecordmap, LOCATE('objectid=', dae.oldrecordmap) + LENGTH('objectid='), 36) as objectid,
   dae.date as modified
 
 from auditLog.DatasetAuditEvent as dae

snprc_ehr/resources/queries/study/ReportTcruziNewPositives.query.xml

@@ -23,7 +23,7 @@
                     <column columnName="TcruziResult">
                         <columnTitle>T cruzi result</columnTitle>
                     </column>
-                    <column columnName="MinDate">
+                    <column columnName="FirstDate">
                         <columnTitle>First Date</columnTitle>
                     </column>
                 </columns>

snprc_ehr/resources/queries/study/ReportTcruziSummaryAll/.qview.xml

@@ -35,7 +35,7 @@
                 <property name="columnTitle" value="MaxDate"/>
             </properties>
         </column>
-        <column name="TestCountZ">
+        <column name="TestCount">
             <properties>
                 <property name="columnTitle" value="TestCount"/>
             </properties>

snprc_ehr/resources/queries/study/SndBcsSource.sql

@@ -3,7 +3,7 @@ SELECT
     b.SubjectId as participantid,
     b.date,
     l.value as BCS,
-    CAST(SUBSTRING(l.value, 1, locate(' -', l.value ,1)) AS varchar(4))  AS BCSValue,
+    CAST(SUBSTRING(l.value, 1, CAST(locate(' -', l.value, 1) AS INTEGER)) AS varchar(4))  AS BCSValue,
     p.ReferenceId as project,
     null as taskid,
     null as requestid,

snprc_ehr/resources/queries/study/acq_dispHistory.sql

@@ -21,9 +21,9 @@
 
 SELECT
 a.id as id, a.date as acq_date,
-          a.acquisitionType.description + ' (' + cast(a.AcquisitionType as varchar(10)) + ')' as acquisitionType,
+          a.acquisitionType.description || ' (' || cast(a.AcquisitionType as varchar(10)) || ')' as acquisitionType,
             d.date as disp_date,
-            d.dispositionType.description + ' (' + cast(d.dispositionType as varchar(10))  + ')' as dispositionType,
+            d.dispositionType.description || ' (' || cast(d.dispositionType as varchar(10))  || ')' as dispositionType,
 
 FROM arrival a
 	LEFT OUTER JOIN departure d

snprc_ehr/resources/queries/study/availableChargeIds.sql

@@ -49,7 +49,7 @@ SELECT DISTINCT
     sp.projectType AS sndProjectType,
     sp.ObjectId AS sndProjectObjectId,
     c.caseid AS admitId,
-    c.problem + '/' + c.admitcomplaint AS projectText,
+    c.problem || '/' || c.admitcomplaint AS projectText,
     GREATEST (c.date, sp.startDate) AS startDate,
     LEAST (c.enddate, TIMESTAMPADD('SQL_TSI_DAY', 1, sp.endDate), NOW()) AS endDate,
     sp.projectId AS sndProjectId,
@@ -62,4 +62,4 @@ FROM study.cases AS c
 WHERE d.id = ANIMAL_ID
   AND vcbs.species = d.species.arc_species_code
   AND GREATEST (c.date, sp.startDate) <= EVENT_DATE
-  AND LEAST (c.endDate, TIMESTAMPADD('SQL_TSI_DAY', 1, sp.endDate), NOW()) >= EVENT_DATE
+  AND LEAST (c.endDate, TIMESTAMPADD('SQL_TSI_DAY', 1, sp.endDate), NOW()) >= EVENT_DATE