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fix: made top-k enrichment plot notebook more general #76

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jeffreyHoelzel merged 1 commit into from
May 22, 2026
Merged

fix: made top-k enrichment plot notebook more general #76

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11 changes: 7 additions & 4 deletions ...ooks/cwp_topk_reactivity_enrichment.ipynb → notebooks/topk_reactivity_enrichment.ipynb
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Expand Up @@ -2,11 +2,12 @@
"cells": [
{
"cell_type": "markdown",
"id": "dcf13676",
"metadata": {},
"source": [
"# CWP Top-K Reactivity Enrichment (v1)\n",
"# Top-K Reactivity Enrichment (v1)\n",
"\n",
"This notebook demonstrates practical downselection value by ranking CWP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n",
"This notebook demonstrates practical downselection value by ranking CWP or BKP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n",
"\n",
"v1 uses current pulled artifacts only (`PredOnes` from `peptide_comparison.csv`) and does not modify pipeline behavior."
]
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"outputs": [],
"source": [
"# Parameterized config\n",
"base_dir = Path(\"localdata/evals/cocci_eval/seeded_runs\")\n",
"# base_dir = Path(\"data/evals/cwp_eval/seeded_runs\")\n",
"base_dir = Path(\"data/evals/bkp_eval/seeded_runs\")\n",
"# model_id = \"flagship1\"\n",
"model_id = \"flagship2\"\n",
"set_id = \"set_01\"\n",
"set_id = \"set_09\"\n",
"mode = \"combined\"\n",
"\n",
"k_start = 500\n",
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