Lange Lab
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ProteoForge_Analysis
ProteoForge_Analysis PublicAll the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".
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Library-Filtering
Library-Filtering PublicScript to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.
Python 1
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Analysis_of_QuEStVar_Manuscript
Analysis_of_QuEStVar_Manuscript PublicAll the scripts and notebooks used to produce the data written in the manuscript titled "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer c…
Repositories
- RoLiM_Standalone Public
LangeLab/RoLiM_Standalone’s past year of commit activity - PXAudit Public
Audit PRIDE proteomics study metadata from the command line. Scores each dataset on a 7-tier FAIR ladder and a quantification-readiness axis. Results land in a local SQLite database.
LangeLab/PXAudit’s past year of commit activity - pxscraper Public
Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.
LangeLab/pxscraper’s past year of commit activity - ProteoForge_Analysis Public
All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics".
LangeLab/ProteoForge_Analysis’s past year of commit activity - Analysis_of_QuEStVar_Manuscript Public
All the scripts and notebooks used to produce the data written in the manuscript titled "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer cell lines and presents a general approach to investigating biological systems".
LangeLab/Analysis_of_QuEStVar_Manuscript’s past year of commit activity - Library-Filtering Public
Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.
LangeLab/Library-Filtering’s past year of commit activity - Rolim_DE Public
LangeLab/Rolim_DE’s past year of commit activity
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