preview of future fre.cmor

[ilaflott]

Describe your changes

the branch/fork is a merge of multiple in-development features across branches in other PRs. which ones is tracked in the script to_merge.sh. this PR is not actually for merging/review, it is for previewing how things for fre.cmor are coming together, and having the assoc. pipelines provide feedback.

currently merged into this branch :

• fre.cmor: replace nccmp subprocess calls with netCDF4 in cmor run subtool tests #826 / origin/copilot/remove-replace-nccmp-from-tests
• Replace nccmp with xarray in test_remap_pp_components.py #827 / origin/copilot/remove-replace-nccmp-test-remap-pp-components
• Remove nccmp dependency from test_split_netcdf.py, replace with xarray and numpy #828 / origin/copilot/remove-replace-nccmp-in-tests
• Remove cdo/python-cdo from fre-cli, add xarray time averager #830 / origin/copilot/deprecate-cdo-python-cdo-use
• fre.cmor: new fre cmor init command for config fetching #834 / origin/copilot/add-empty-user-experiment-config (needs another unit test for coverage)
• fre.cmor: raise informative error when mip_era config mismatches table format (CMIP6 vs CMIP7) #836 / origin/copilot/fix-cmor-error-cmip6-cmip7
• fre.cmor: accept CF calendar aliases as equivalent (noleap / 365_day, etc.) #837 / origin/copilot/fix-flexibility-calendar-input
• fre.cmor: update to 3.14.2 from 3.14.0 #817 / fork/frecmor-updates-for-cmip7

todo, more important to check, direct influence on fre.cmor:

• re-merge after workflow-functionality updates of Remove cdo/python-cdo from fre-cli, add xarray time averager #830 / origin/copilot/deprecate-cdo-python-cdo-use
• re-merge after addition of unit-test updates of fre.cmor: new fre cmor init command for config fetching #834 / origin/copilot/add-empty-user-experiment-config (needs another unit test for coverage)
  merge in
• when done, merge in fre.cmor: improved and comprehensive omission tracking #833 / copilot/add-omission-tracking-feature
• when done, merge in fre.cmor: create CMIP7 flavored tests of cmor_run_subtool_further_examples #838 / copilot/create-cmip7-flavored-tests
• when done, merge in fre.cmor: harden branded-variable disambiguations #832 / copilot/harden-branded-variable-disambiguations

todo, lower priority, parallel to fre.cmor or trivially relevant:

• when done, merge in Add log_and_raise helper to merge fre_logger.error and raise steps #831 / copilot/merge-fre-logger-error-raise
• merge in update fre.make tests to avoid getcwd, and light pylint cleanup #808 / copilot/fix-flakey-unit-tests
• merge in Add fre_cli_version to model YAML and enforce version compatibility #768 / copilot/add-fre-version-to-model-yaml
• merge in Platform yaml #682 / uramirez8707/platform_yaml (note, a fork that is not mine)

[ilaflott]

first observation, conda environment creation is clocking in at two whole minutes faster than main

[codecov]

Codecov Report

❌ Patch coverage is 77.68240% with 52 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.95%. Comparing base (836559e) to head (156a1d1).

Files with missing lines	Patch %	Lines
fre/cmor/cmor_init.py	53.12%	30 Missing ⚠️
...p/generate_time_averages/frenctoolsTimeAverager.py	4.54%	21 Missing ⚠️
...e/app/generate_time_averages/xarrayTimeAverager.py	98.97%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #842      +/-   ##
==========================================
- Coverage   84.12%   83.95%   -0.17%     
==========================================
  Files          71       73       +2     
  Lines        4944     5098     +154     
==========================================
+ Hits         4159     4280     +121     
- Misses        785      818      +33     

Flag	Coverage Δ
unittests	83.95% <77.68%> (-0.17%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
fre/app/freapp.py	97.14% <ø> (ø)
fre/app/generate_time_averages/__init__.py	100.00% <ø> (ø)
fre/app/generate_time_averages/cdoTimeAverager.py	100.00% <100.00%> (ø)
...p/generate_time_averages/frepytoolsTimeAverager.py	80.43% <100.00%> (+0.14%)	⬆️
...p/generate_time_averages/generate_time_averages.py	92.75% <100.00%> (+0.95%)	⬆️
fre/cmor/__init__.py	100.00% <100.00%> (ø)
fre/cmor/cmor_constants.py	100.00% <100.00%> (ø)
fre/cmor/cmor_helpers.py	93.83% <100.00%> (+0.04%)	⬆️
fre/cmor/cmor_mixer.py	89.96% <100.00%> (+0.09%)	⬆️
fre/cmor/frecmor.py	100.00% <100.00%> (ø)
... and 3 more

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[ilaflott]

can re-open this if needed. closing