Deactivate fre.cmor and redirect to fremor

.cspell.json

@@ -23,6 +23,5 @@
         "fre_cli.egg-info",
         "fre/mkmf",
         "fre/gfdl_msd_schemas",
-        "fre/tests/test_files/cmip6-cmor-tables"
     ]
 }

.github/copilot-instructions.md

@@ -52,7 +52,7 @@ pytest -v fre/[tool]/tests/test_functionality.py::test_a_single_test
 pytest -v fre/app/[app]/tests/test_functionality.py::test_a_single_test
 
 # Code quality
-pylint --fail-under 7.00 --max-line-length 120 --max-args 6 -ry --ignored-modules netCDF4,cmor fre/
+pylint --fail-under 7.00 --max-line-length 120 --max-args 6 -ry --ignored-modules netCDF4 fre/
 ```
 
 **Critical notes**:
@@ -65,7 +65,7 @@ pylint --fail-under 7.00 --max-line-length 120 --max-args 6 -ry --ignored-module
 
 **Command pattern**: `fre [tool] [sub-command] [options]`
 
-**Available tools**: `analysis`, `app`, `catalog`, `check`, `cmor`, `list`, `make`, `pp`, `run`, `yamltools`
+**Available tools**: `analysis`, `app`, `catalog`, `check`, `list`, `make`, `pp`, `run`, `yamltools`
 
 ## Critical Notes
 

.gitmodules

@@ -4,10 +4,3 @@
 [submodule "fre/gfdl_msd_schemas"]
 	path = fre/gfdl_msd_schemas
 	url = https://github.com/NOAA-GFDL/gfdl_msd_schemas
-[submodule "fre/tests/test_files/cmip6-cmor-tables"]
-	path = fre/tests/test_files/cmip6-cmor-tables
-	url = https://github.com/pcmdi/cmip6-cmor-tables
-[submodule "fre/tests/test_files/cmip7-cmor-tables"]
-	path = fre/tests/test_files/cmip7-cmor-tables
-	url = https://github.com/WCRP-CMIP/cmip7-cmor-tables.git
-	branch = main

MANIFEST.in

@@ -1,6 +1,3 @@
 include README.md
 include LICENSE.md
 recursive-include fre *
-# Exclude Python files from cmip6-cmor-tables submodule that have Python 2 syntax
-exclude fre/tests/test_files/cmip6-cmor-tables/CMIP6_CVs/src/*.py
-exclude fre/tests/test_files/cmip6-cmor-tables/scripts/*.py

docs/conf.py

@@ -31,7 +31,6 @@
     'catalogbuilder',
     'cdo',
     'cftime',
-    'cmor',
     'cylc',
     'cylc-flow',
     'cylc-rose',

docs/contributing_to_doc.rst

@@ -52,8 +52,8 @@
 lightweight approach (recommended for docs-only)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 If you only need to build documentation and don't need the full ``fre-cli`` environment,
 you can use a minimal setup. This approach uses ``autodoc_mock_imports`` in ``docs/conf.py``
-to mock heavy dependencies like ``netCDF4``, ``cmor``, ``xarray``, etc.
+to mock heavy dependencies like ``netCDF4``, ``xarray``, etc.
 
 From the root-directory of your local repository copy:
 
@@ -66,7 +66,7 @@
  # Install minimal dependencies
  pip install sphinx renku-sphinx-theme sphinx-rtd-theme click pyyaml jsonschema
 
  # Set PYTHONPATH so Sphinx can find the fre modules
  export PYTHONPATH="${PWD}:${PYTHONPATH}"
 
  # Generate API docs and build

docs/tools.rst

@@ -55,17 +55,11 @@ Argument flags are not positional, can be specified in any order. Some arguments
 ``fre cmor``
 ============
 
-* See also, ``fre cmor``'s `README <https://github.com/NOAA-GFDL/fre-cli/blob/main/fre/cmor/README.md>`_
-* See also, ``fre cmor``'s `project board <https://github.com/orgs/NOAA-GFDL/projects/35>`_
+* Deprecated, see ``fremor`` `here <https://github.com/NOAA-GFDL/fremor>`_
 
-This set of tools leverages the external ``cmor`` python package within the ``fre`` ecosystem. ``cmor`` is an
-acronym for "climate model output rewriter". The process of rewriting model-specific output files for model
-intercomparisons (MIPs) using the ``cmor`` module is, quite cleverly, referred to as "CMORizing".
+please use ``NOAA-GFDL/fremor``
 
 
-.. include:: tools/cmor.rst
-
-
 ``fre make``
 ============
 

docs/usage.rst

@@ -41,10 +41,6 @@ Postprocess FMS history output
 .. include:: usage/postprocess.rst
 .. include:: usage/guides/fre_pp_guide.rst
 
-CMORize Postprocessed Output
-=============================
-.. include:: usage/cmor.rst
-
 Generate data catalogs
 ======================
 .. include:: tools/catalog.rst