Add simulation extraction and viewing notebook#226

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jthorton wants to merge 16 commits into

mainfrom

Commits on Sep 5, 2025

add trajectory notebook
jthorton
committed

Commits on Sep 22, 2025

add info on extracting end states, use mdtraj to image the molecules
jthorton
committed

Commits on Oct 8, 2025

Commits on Oct 22, 2025

Merge branch 'main' into traj-view
jthorton
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Commits on Dec 11, 2025

Commits on Jan 6, 2026