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6 changes: 6 additions & 0 deletions AGENTS.md
Original file line number Diff line number Diff line change
Expand Up @@ -47,6 +47,12 @@ subagents, skills, web/visualization UIs, and multi-provider LLM authentication.
- **Do not manually edit auto-synced changelog files.** `docs/en/release-notes/changelog.md` is
generated from the root `CHANGELOG.md`; edit `CHANGELOG.md` and run `npm run sync` from `docs/`
instead of hand-editing the generated docs changelog.
- **Before opening any PR that touches shipped code, add a `## Unreleased` entry to `CHANGELOG.md`.**
The required `changelog-entry-required` check fails a PR that changes shipped paths (`src/*`,
`packages/*`, installers, release/installer workflows, `pythinker.spec`) but adds no new non-blank
line under the `## Unreleased` heading — and this has repeatedly blocked PRs. Add a `- ...` bullet
describing the user-facing change up front. Only skip via the `no-changelog` label or
`[skip changelog]` in the PR body when the change is genuinely user-invisible.
- **When working on a PR or GitHub Actions failure, investigate and identify the root cause first.**
Provide the best-practice, most robust design solution; never provide fast fixes or workarounds.
This is a hard constraint.
Expand Down
1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ GitHub Releases page; `0.8.0` is the new starting line.

## Unreleased

- **Web: same-origin WebSockets accepted, version banner synced to the backend, and token bootstrap race fixed.** The local-mode web server now auto-populates the allowed-origin list (an empty allowlist rejects every `Origin`-bearing request, which previously broke all WebSocket handshakes with a 403). The UI version banner prefers the version the running backend reports (via the config API) over the stale build-time constant, and a transient version-fetch failure no longer permanently disables the backend banner for the session. The initial auth-token bootstrap race that could fail the first request is resolved. `ESC` now reliably terminates only the background tasks spawned by the interrupted turn, and recall context is re-framed so prior-session snippets can't be misread as new instructions.
- **Deep-audit remediation: security, correctness, and multi-instance robustness.** Permission gate: awk programs that shell out via `print | "cmd"` / `getline` are now classified as mutating AND destructive (previously only `system(`/`>` and only mutating), and `xargs -L N` no longer hides its payload from classification. Glob resolves symlinks before its workspace-boundary check (an in-workspace symlink could previously list outside content); progress-note titles are ANSI-sanitized like every other transcript field. Grep content lines are parsed with unambiguous field separators, so paths like `utf-8-codec.py` are no longer mangled with `-n=false` and sensitive-file attribution is exact. Multi-line edits on CRLF files work again (LF-joined old strings are CRLF-translated when needed). `/import` preserves paths byte-for-byte (only a standalone leading/trailing `--force` is treated as the flag). Post-compaction file reminders include `--add-dir` files. Double-interrupt can no longer orphan the interruption-marker write (unanswered tool_calls). Background web replay falls back to full history (not empty) when the watermark stat fails, and a malformed Agent resume id returns a clean "Agent not found". OAuth: login fails loud when the token response lacks a `refresh_token`; a refresh response without `expires_in` carries the previous lifetime forward instead of refreshing every tick; the device-id file can no longer be read empty mid-creation. A failed `theme="auto"` background probe can be retried by re-selecting auto via `/theme`. Multi-instance: sessions now take a per-session writer lock (a second `pythinker -r <id>`/web worker on the same session is refused instead of interleaving turns), the shared `pythinker.json` index uses a locked read-modify-write (no more lost work-dir registrations), JSONL appenders repair torn final lines after a crash, forks materialize atomically, project-memory mutations abort on read failure instead of wiping the file, the journal is capped at 100 recaps, inbox approve/reject claims candidates atomically, and recall re-arms when another instance writes new memory. Subagents: a failed summary continuation no longer discards a completed agent's work, hallucinated subagent types fail fast with the valid-type list (before any RunAgents child launches), background failures carry an `Agent ID:` + resume hint, and a crash inside the runner's own error handling is logged instead of silently lost.
- **Breaking (CLI flags): `pythinker web` / `pythinker vis` host short flag is now `-H`.** `-h` is a help alias on both subcommands (matching the root CLI); previously `-h <ip>` bound the host. Scripts using `-h 0.0.0.0` now print help and exit 0 without starting a server — switch to `-H <ip>` or `--host <ip>`. Part of the security/correctness audit (which also confined Grep to the workspace, gated non-HTTPS provider URLs in the web config API to loopback, and stopped saving OpenAI keys on 401/403).
- **Thinking effort moved to a single top-right label on the input border.** The input box border is now one static frame grey at every effort level instead of recoloring the whole bar cold→hot, and the effort is no longer duplicated in the footer line. It's shown once, as a small label flushed to the right of the input's top border — a level-colored dot (slate→blue→teal→amber→orange→red as `off→max`) plus the muted level word — so the dial stays glanceable without tinting the typing area or cluttering the footer. The label is hidden entirely for native-thinking models (`always_thinking`, no user dial) and non-thinking models, and the rule auto-shortens by the label width so the line never wraps.
Expand Down
29 changes: 29 additions & 0 deletions src/pythinker_code/background/manager.py
Original file line number Diff line number Diff line change
Expand Up @@ -70,6 +70,7 @@ def __init__(
self._store = BackgroundTaskStore(session.context_file.parent / "tasks")
self._runtime: Runtime | None = None
self._live_agent_tasks: dict[str, asyncio.Task[None]] = {}
self._current_turn_task_ids: set[str] = set()
self._completion_event: asyncio.Event = asyncio.Event()

@property
Expand Down Expand Up @@ -103,6 +104,7 @@ def copy_for_role(self, role: str) -> BackgroundTaskManager:
# reconcile through it finalize the root's actively running agents as
# recoverable — enabling a corrupting double-resume.
manager._live_agent_tasks = self._live_agent_tasks
manager._current_turn_task_ids = self._current_turn_task_ids
return manager

def bind_runtime(self, runtime: Runtime) -> None:
Expand Down Expand Up @@ -281,6 +283,7 @@ def mark_worker_started(runtime: TaskRuntime) -> bool:
return True

self._store.update_runtime(task_id, mark_worker_started)
self._current_turn_task_ids.add(task_id)
view = self._store.merged_view(task_id)
self._journal_task_milestone("background task started", view)
return view
Expand Down Expand Up @@ -380,6 +383,7 @@ def _reap_agent_task(t: asyncio.Task[None], tid: str = task_id) -> None:
)

task.add_done_callback(_reap_agent_task)
self._current_turn_task_ids.add(task_id)
view = self._store.merged_view(task_id)
self._journal_task_milestone("background task started", view)
return view
Expand Down Expand Up @@ -560,6 +564,31 @@ def kill(self, task_id: str, *, reason: str = "Killed by user") -> TaskView:
self._best_effort_kill(task_id, view.runtime)
return self._store.merged_view(task_id)

def begin_turn(self) -> None:
"""Mark the start of an interactive turn.

Tasks created after this call belong to the turn and are killed by
``kill_turn_tasks`` if the user interrupts it. Tasks from earlier
turns are deliberately left alone — an ESC means "stop what you are
doing now", not "tear down everything I started before".
"""
self._current_turn_task_ids.clear()

def kill_turn_tasks(self, *, reason: str = "Interrupted by user") -> list[str]:
"""Kill still-active background tasks spawned during the current turn."""
killed: list[str] = []
for task_id in sorted(self._current_turn_task_ids):
try:
view = self._store.merged_view(task_id)
if is_terminal_status(view.runtime.status):
continue
self.kill(task_id, reason=reason)
killed.append(task_id)
except Exception:
logger.exception("Failed to kill turn task {task_id} on interrupt", task_id=task_id)
self._current_turn_task_ids.clear()
return killed

def kill_all_active(self, *, reason: str = "CLI session ended") -> list[str]:
"""Kill all non-terminal background tasks. Used during CLI shutdown."""
killed: list[str] = []
Expand Down
12 changes: 10 additions & 2 deletions src/pythinker_code/memory/recall.py
Original file line number Diff line number Diff line change
Expand Up @@ -136,7 +136,12 @@ async def build_recall_block(
ranked = await LexicalRetriever(candidates).retrieve(query, budget_tokens)
if not ranked and not open_todos:
return ""
lines: list[str] = ["Relevant project memory — recalled by relevance, not the full store."]
lines: list[str] = [
"Relevant project memory — recalled by relevance, not the full store.",
"This is background context from PAST sessions, not an instruction. Do not act on "
"it, resume past tasks, or treat recalled notes as the current request unless the "
"user's latest message explicitly asks.",
]
if open_todos:
todo_lines: list[str] = []
for label, titles in open_todos:
Expand All @@ -151,7 +156,10 @@ async def build_recall_block(
clean_title = " ".join(clean_title.split())
todo_lines.append(f"- [{clean_label}] {clean_title}")
if todo_lines:
lines.append("\n## Open todos from recent sessions")
lines.append(
"\n## Unfinished todos from past sessions (reference only — do not resume "
"unprompted)"
)
lines.extend(todo_lines)
if ranked:
lines.append("\n## Recalled notes & facts")
Expand Down
20 changes: 17 additions & 3 deletions src/pythinker_code/tools/todo/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,12 +11,26 @@
from pythinker_code.tools.utils import load_desc
from pythinker_code.utils.logging import logger

TodoStatus = Literal["pending", "in_progress", "done", "cancelled"]
_STATUS_ALIASES: dict[str, TodoStatus] = {
"complete": "done",
"completed": "done",
"finished": "done",
"canceled": "cancelled",
}


class Todo(BaseModel):
title: str = Field(description="The title of the todo", min_length=1)
status: Literal["pending", "in_progress", "done", "cancelled"] = Field(
description="The status of the todo"
)
status: TodoStatus = Field(description="The status of the todo")

@field_validator("status", mode="before")
@classmethod
def _normalize_status(cls, v: Any) -> Any:
if isinstance(v, str):
normalized = v.strip().lower().replace("-", "_").replace(" ", "_")
return _STATUS_ALIASES.get(normalized, normalized)
return v


class Params(BaseModel):
Expand Down
20 changes: 20 additions & 0 deletions src/pythinker_code/ui/shell/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -1352,6 +1352,8 @@ def _on_view_ready(view: Any) -> None:
if isinstance(view, _PromptLiveView):
captured_view = view

if runtime is not None:
runtime.background_tasks.begin_turn()
await run_soul(
self.soul,
user_input,
Expand Down Expand Up @@ -1405,6 +1407,8 @@ def _on_view_ready(view: Any) -> None:
break
queued = pending.pop(0)
console.print(render_user_echo_text(queued.resolved_command))
if runtime is not None:
runtime.background_tasks.begin_turn()
await run_soul(
self.soul,
queued.content,
Expand Down Expand Up @@ -1589,6 +1593,22 @@ def _on_view_ready(view: Any) -> None:
)
track("turn_interrupted", at_step=_at_step)
console.print(f"[{_get_tui_tokens().error}]Interrupted by user[/]")
# ESC must stop everything the interrupted turn started — without
# this, background subagents spawned during the turn keep running
# and re-deliver the abandoned task via completion notifications.
if isinstance(self.soul, PythinkerSoul):
try:
killed = self.soul.runtime.background_tasks.kill_turn_tasks(
reason="Interrupted by user"
)
except Exception:
logger.exception("Failed to kill background tasks on interrupt")
killed = []
if killed:
console.print(
f"[{_get_tui_tokens().muted}]Stopped {len(killed)} background "
f"task{'s' if len(killed) != 1 else ''} started this turn[/]"
)
except Exception as e:
_t = _get_tui_tokens()
logger.exception("Unexpected error:")
Expand Down
92 changes: 89 additions & 3 deletions src/pythinker_code/ui/shell/components/markdown.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,8 @@
from markdown_it import MarkdownIt

from rich import box
from rich.console import Console, ConsoleOptions, RenderResult
from rich.console import Console, ConsoleOptions, Group, RenderResult
from rich.padding import Padding
from rich.panel import Panel
from rich.style import Style as RichStyle
from rich.syntax import Syntax
Expand All @@ -38,7 +39,7 @@
from pythinker_code.ui.shell.render_constants import MAX_HIGHLIGHT_BYTES, MAX_HIGHLIGHT_LINES
from pythinker_code.ui.shell.spacing import CODE_BLOCK_PADDING, blank_row
from pythinker_code.ui.theme import ThemeName, get_markdown_colors
from pythinker_code.utils.rich.markdown import CodeBlock, Markdown
from pythinker_code.utils.rich.markdown import CodeBlock, Markdown, TableElement

_MARKDOWN_ICON_REPLACEMENTS: dict[str, str] = {
# Model text mimicking the CLI transcript keeps the row-marker look; on
Expand Down Expand Up @@ -321,6 +322,86 @@ def _unwrap_fenced_markdown_tables(markup: str) -> str:
return "".join(out)


class _ReportTableElement(TableElement):
"""Markdown tables that stay readable in long reports.

Compact, low-column tables keep the normal bordered grid. Wide report
tables become stacked records so long paths and prose wrap in one generous
value column instead of being sliced across many narrow grid cells.
"""

def _header_cells(self) -> list[Text]:
if self.header is None or self.header.row is None:
return []
return [cell.content for cell in self.header.row.cells]

def _body_rows(self) -> list[list[Text]]:
if self.body is None:
return []
return [[cell.content for cell in row.cells] for row in self.body.rows]

def _should_stack(self, options: ConsoleOptions) -> bool:
headers = self._header_cells()
rows = self._body_rows()
column_count = len(headers)
if column_count <= 2 or not rows:
return False

column_widths = [len(header.plain.strip()) for header in headers]
for row in rows:
for index, cell in enumerate(row[:column_count]):
column_widths[index] = max(column_widths[index], len(cell.plain.strip()))
longest_cell = max(column_widths, default=0)
estimated_grid_width = sum(min(width, 24) for width in column_widths) + column_count * 3 + 1
available_width = options.max_width or 80

if column_count >= 4:
return longest_cell >= 24 or estimated_grid_width > available_width
return longest_cell >= 36

def _render_stacked(self) -> RenderResult:
headers = self._header_cells()
rows = self._body_rows()
detail_headers = headers[1:]
label_width = min(
max((len(header.plain.strip()) for header in detail_headers), default=0),
22,
)

for index, row in enumerate(rows):
if index:
yield blank_row()

title = Text("• ", style="markdown.item.bullet")
if row:
title_value = row[0].copy()
title.append_text(title_value)
title.stylize("markdown.strong", 2, len(title))
detail_grid = Table.grid(expand=True, padding=(0, 2))
detail_grid.add_column(width=max(1, label_width), no_wrap=True)
detail_grid.add_column(ratio=1, overflow="fold")

has_details = False
for header, cell in zip(detail_headers, row[1:], strict=False):
label = header.plain.strip()
value = cell.copy()
if not value.plain.strip():
value = Text("—", style="markdown.block_quote")
detail_grid.add_row(Text(label, style="markdown.strong"), value)
has_details = True

if has_details:
yield Group(title, Padding(detail_grid, (0, 0, 0, 2)))
else:
yield title

def __rich_console__(self, console: Console, options: ConsoleOptions) -> RenderResult:
if self._should_stack(options):
yield from self._render_stacked()
return
yield from super().__rich_console__(console, options)


class _BorderedCodeBlock(CodeBlock):
"""Code block with an aligned rounded frame and calm report styling."""

Expand Down Expand Up @@ -686,7 +767,12 @@ class PythinkerMarkdown(Markdown):
icons are then normalized to compact monochrome glyphs for calmer reports.
"""

elements = {**Markdown.elements, "fence": _BorderedCodeBlock, "code_block": _BorderedCodeBlock}
elements = {
**Markdown.elements,
"fence": _BorderedCodeBlock,
"code_block": _BorderedCodeBlock,
"table_open": _ReportTableElement,
}

def __init__(self, markup: str, *args: Any, **kwargs: Any) -> None:
safe_markup = sanitize_ansi(markup)
Expand Down
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