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Bump the all-julia-packages group across 4 directories with 6 updates#230

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Bump the all-julia-packages group across 4 directories with 6 updates#230
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Updates the requirements on Libtask, Chairmarks, Documenter, Aqua, StableRNGs and Turing to permit the latest version.
Updates Libtask to 0.9.17

Release notes

Sourced from Libtask's releases.

v0.9.17

Libtask v0.9.17

Diff since v0.9.16

Further improve performance by dropping unused Refs from the tape entirely.

Merged pull requests:

Changelog

Sourced from Libtask's changelog.

0.9.17

Further improve performance by dropping unused Refs from the tape entirely.

0.9.16

Improve performance by removing unnecessary set_ref_at! / get_ref_at calls.

0.9.15

Improve Libtask's handling of non-const global variables. Previously, usage of non-const globals in a TapedTask would cause Libtask to throw an "Unbound GlobalRef not allowed in value position" error. They should now work, and you can mutate global variables between calls to consume.

0.9.14

Added the Libtask.might_produce_if_sig_contains method.

0.9.13

Fix a bug where SSA registers in throw_undef_if_not expressions were not being correctly handled. This affected TapedTasks where the underlying function had variables that were conditionally defined.

Also adds an internal function, Libtask.generate_ir, which is useful for debugging. This is not part of the public API; however if you are developing Libtask it is a useful function for quickly inspecting the IR that Libtask generates, both pre- and post-optimisation.

0.9.12

Added a new method, Libtask.get_taped_globals(tt::TapedTask). This method extracts the taped globals stored inside tt.

Note that this is distinct from the existing method Libtask.get_taped_globals(::Type{T}) where {T}. That method is meant for being called inside a TapedTask, and it extracts the taped globals from the task that it is currently inside.

This PR also improves the error message for the latter method. When calling Libtask.get_taped_globals(::Type{T}) where {T} outside of a TapedTask, this now throws a Libtask.NotInTapedTaskError (which can be specifically caught) and shows a better error message.

0.9.11

When constructing a TapedTask with a method that will error when run (e.g. method doesn't exist, or is ambiguous) a more helpful error is shown.

0.9.10

Fix a bug introduced in 0.9.9 that made certain phi nodes with Union types fail a type assertion.

0.9.9

Remove manual opaque closure optimisation functions in favour of setting the world age and letting the compiler do more work for us, and providing it with some more type information. This changes no functionality, and shouldn't change performance either, but simplifies code.

0.9.8

... (truncated)

Commits

Updates Chairmarks to 1.3.1

Release notes

Sourced from Chairmarks's releases.

v1.3.1

Chairmarks v1.3.1

Diff since v1.3.0

Merged pull requests:

Closed issues:

  • Sample no longer accepts evals::Int (#156)
Commits
  • 7ec9369 Release 1.3.1
  • e7bb391 Keep old 9-arg Sample constructor and discard checksum (#157)
  • 9414b64 Release 1.3.0! (#155)
  • f4f6a6c Improve error message in the absence of arguments to @b and add tests (#153)
  • d35483b Remove a warning from tests (#154)
  • 3051d66 Codecov updates (#152)
  • c9571a3 Update docs for chagnes since 1.2.2 (#150)
  • 0d2b13c Stop pretending to run RegressionTests on main (#151)
  • 6daa359 Tell the compiler about the value of the input to f if it is a type (and test...
  • 154b06a Move donotdelete definition to compat (#147)
  • Additional commits viewable in compare view

Updates Libtask to 0.9.17

Release notes

Sourced from Libtask's releases.

v0.9.17

Libtask v0.9.17

Diff since v0.9.16

Further improve performance by dropping unused Refs from the tape entirely.

Merged pull requests:

Changelog

Sourced from Libtask's changelog.

0.9.17

Further improve performance by dropping unused Refs from the tape entirely.

0.9.16

Improve performance by removing unnecessary set_ref_at! / get_ref_at calls.

0.9.15

Improve Libtask's handling of non-const global variables. Previously, usage of non-const globals in a TapedTask would cause Libtask to throw an "Unbound GlobalRef not allowed in value position" error. They should now work, and you can mutate global variables between calls to consume.

0.9.14

Added the Libtask.might_produce_if_sig_contains method.

0.9.13

Fix a bug where SSA registers in throw_undef_if_not expressions were not being correctly handled. This affected TapedTasks where the underlying function had variables that were conditionally defined.

Also adds an internal function, Libtask.generate_ir, which is useful for debugging. This is not part of the public API; however if you are developing Libtask it is a useful function for quickly inspecting the IR that Libtask generates, both pre- and post-optimisation.

0.9.12

Added a new method, Libtask.get_taped_globals(tt::TapedTask). This method extracts the taped globals stored inside tt.

Note that this is distinct from the existing method Libtask.get_taped_globals(::Type{T}) where {T}. That method is meant for being called inside a TapedTask, and it extracts the taped globals from the task that it is currently inside.

This PR also improves the error message for the latter method. When calling Libtask.get_taped_globals(::Type{T}) where {T} outside of a TapedTask, this now throws a Libtask.NotInTapedTaskError (which can be specifically caught) and shows a better error message.

0.9.11

When constructing a TapedTask with a method that will error when run (e.g. method doesn't exist, or is ambiguous) a more helpful error is shown.

0.9.10

Fix a bug introduced in 0.9.9 that made certain phi nodes with Union types fail a type assertion.

0.9.9

Remove manual opaque closure optimisation functions in favour of setting the world age and letting the compiler do more work for us, and providing it with some more type information. This changes no functionality, and shouldn't change performance either, but simplifies code.

0.9.8

... (truncated)

Commits

Updates Documenter to 1.17.0

Release notes

Sourced from Documenter's releases.

v1.17.0

Added

  • The version selector now also preserves the anchor (hash) when switching between documentation versions. Additionally, the outdated/dev version warning banner now also tries to keep you on the same page (and position) when linking to the latest stable release. (#2880)
  • Added Remotes.Forgejo for specifying a Remote hosted on a Forgejo instance (such as codeberg.org). (#2857)
  • Doctests now default to the parser_for_module of the module that the docstring appears in, allowing modules that set their syntax version via Base.Experimental.@set_syntax_version to have their doctests parsed with the correct syntax automatically. Also added support for DocTestSyntax metadata and per-block syntax= attributes to explicitly specify a syntax version. (#2874)
  • Added a show_log keyword for Documenter.LaTeX to print LaTeX compiler logs to stdout when PDF compilation fails, and support for forcing this via DOCUMENTER_LATEX_SHOW_LOGS in CI environments. (#1697)
  • Added support for new features of the Markdown stdlib introduced in Julia 1.14, namely strike through, HTML blocks and inline HTML (this requires Julia 1.14+ and MarkdownAST 0.1.3).

Changed

  • reduced time complexity from O(n^2) to O(n) to improve the initial load time for search (#2875)
  • Git no longer displays a message about the default branch name when calling deploydocs(). (#2854)
  • Don't escape characters (such as ~) in URLs when writing LaTeX. (#2210)
  • Tweak the layout of the table of contents in LaTeX / PDF output so that for a document with 8 or more parts, the part number (VIII) does not overlap with the part title. (#2871)

Fixed

  • Fixed rendering of operator docstring bindings such as Base.:(:) and Base.:(==) in doc headers and indices. (#2844)

The changes are documented in the CHANGELOG.md file.

Diff since v1.16.1

Changelog

Sourced from Documenter's changelog.

Version [v1.17.0] - 2026-02-20

Added

  • The version selector now also preserves the anchor (hash) when switching between documentation versions. Additionally, the outdated/dev version warning banner now also tries to keep you on the same page (and position) when linking to the latest stable release. (#2880)
  • Added Remotes.Forgejo for specifying a Remote hosted on a Forgejo instance (such as codeberg.org). (#2857)
  • Doctests now default to the parser_for_module of the module that the docstring appears in, allowing modules that set their syntax version via Base.Experimental.@set_syntax_version to have their doctests parsed with the correct syntax automatically. Also added support for DocTestSyntax metadata and per-block syntax= attributes to explicitly specify a syntax version. (#2874)
  • Added a show_log keyword for Documenter.LaTeX to print LaTeX compiler logs to stdout when PDF compilation fails, and support for forcing this via DOCUMENTER_LATEX_SHOW_LOGS in CI environments. (#1697)
  • Added support for new features of the Markdown stdlib introduced in Julia 1.14, namely strike through, HTML blocks and inline HTML (this requires Julia 1.14+ and MarkdownAST 0.1.3).

Changed

  • reduced time complexity from O(n^2) to O(n) to improve the initial load time for search (#2875)
  • Git no longer displays a message about the default branch name when calling deploydocs(). (#2854)
  • Don't escape characters (such as ~) in URLs when writing LaTeX. (#2210)
  • Tweak the layout of the table of contents in LaTeX / PDF output so that for a document with 8 or more parts, the part number (VIII) does not overlap with the part title. (#2871)

Fixed

  • During cross-referencing find_object correctly locates the Documenter.Object associated with UnionAll method signatures. (#2836, #2889)
  • Fixed rendering of operator docstring bindings such as Base.:(:) and Base.:(==) in doc headers and indices. (#2844)

Version [v1.16.1] - 2025-11-21

Fixed

  • The -g is now passed to curl when checking links, to disable globbing, which could cause undesirable behavior when checking links containing characters like for example [, {, & or ?. (#2839, #2842)
  • Fixed insufficient paragraph spacing in HTML output for @docs blocks. ([#2845, #2847])
  • Don't expand details admonition by default. ([#2846, #2847])
  • Removed superfluous vertical space at end of @docs blocks. (#2849)

Version [v1.16.0] - 2025-11-14

Added

  • Added option treat_markdown_warnings_as_error which throws an error when encountering a markdown/interpolation warning (#2792, #2751)
  • Footnotes can now be previewed by hovering over the link. (#2080)
  • The version selector now attempts to stay on the same page when switching between documentation versions. If the page doesn't exist in the target version, it falls back to the version homepage. (#2801)
  • Allow named @eval blocks: such a block shares its execution context with all other @eval, @example, @repl and @setup blocks on the same page which use the same name. (#2074, #2812)

Changed

  • Page category is removed from the search index and now everything is in section category. (#2762, #2413)
  • Changed the docstring block accordions from a custom implementation to HTML details+summary tag. (#2772, #2773)
  • Improved the search tokenizer and custom trimmer to improve search results. (#1457, #2114, #2744)
  • Improved several warning/error messages to (more accurately) report the location (filename, line range) in which the warning/error originated. (#2426, #2752, #2793, #2803, #2809)
  • Warn/error if jldoctest starts with an empty line; or lacks empty line between two REPL prompts. (#2031, #2083, #2679, #2808)
  • The forcepush=true option to deploydocs now uses --force-with-lease instead of --force. (#2817)
  • Improved the generation of anchors for admonitions in HTML output to be more stable and e.g. not change due to changes of the internal representation across different Julia versions. (#2710)

... (truncated)

Commits

Updates Libtask to 0.9.17

Release notes

Sourced from Libtask's releases.

v0.9.17

Libtask v0.9.17

Diff since v0.9.16

Further improve performance by dropping unused Refs from the tape entirely.

Merged pull requests:

Changelog

Sourced from Libtask's changelog.

0.9.17

Further improve performance by dropping unused Refs from the tape entirely.

0.9.16

Improve performance by removing unnecessary set_ref_at! / get_ref_at calls.

0.9.15

Improve Libtask's handling of non-const global variables. Previously, usage of non-const globals in a TapedTask would cause Libtask to throw an "Unbound GlobalRef not allowed in value position" error. They should now work, and you can mutate global variables between calls to consume.

0.9.14

Added the Libtask.might_produce_if_sig_contains method.

0.9.13

Fix a bug where SSA registers in throw_undef_if_not expressions were not being correctly handled. This affected TapedTasks where the underlying function had variables that were conditionally defined.

Also adds an internal function, Libtask.generate_ir, which is useful for debugging. This is not part of the public API; however if you are developing Libtask it is a useful function for quickly inspecting the IR that Libtask generates, both pre- and post-optimisation.

0.9.12

Added a new method, Libtask.get_taped_globals(tt::TapedTask). This method extracts the taped globals stored inside tt.

Note that this is distinct from the existing method Libtask.get_taped_globals(::Type{T}) where {T}. That method is meant for being called inside a TapedTask, and it extracts the taped globals from the task that it is currently inside.

This PR also improves the error message for the latter method. When calling Libtask.get_taped_globals(::Type{T}) where {T} outside of a TapedTask, this now throws a Libtask.NotInTapedTaskError (which can be specifically caught) and shows a better error message.

0.9.11

When constructing a TapedTask with a method that will error when run (e.g. method doesn't exist, or is ambiguous) a more helpful error is shown.

0.9.10

Fix a bug introduced in 0.9.9 that made certain phi nodes with Union types fail a type assertion.

0.9.9

Remove manual opaque closure optimisation functions in favour of setting the world age and letting the compiler do more work for us, and providing it with some more type information. This changes no functionality, and shouldn't change performance either, but simplifies code.

0.9.8

... (truncated)

Commits

Updates Aqua to 0.8.16

Release notes

Sourced from Aqua's releases.

v0.8.16

The changes are documented in the CHANGELOG.md file.

Diff since v0.8.15

Changelog

Sourced from Aqua's changelog.

Version [v0.8.16] - 2026-06-05

Changed

  • Adapt to deprecations in julia 1.14. (#381)
  • Fix some world age issues in test_ambiguities. (#366)

Version [v0.8.15] - 2026-06-02

Changed

  • Use Base.isType for Type{...} checks in piracy detection so it keeps working when Type{Foo} is no longer a DataType on future Julia versions. (#379)

Version [v0.8.14] - 2025-08-04

Changed

  • Adapt to internal method table changes in Julia 1.12 and later. (#344)

Version [v0.8.13] - 2025-05-28

Changed

  • Adapt to internal method table changes in Julia 1.12 and later. (#334)

Version [v0.8.12] - 2025-05-05

Changed

  • Add test_undocumented_names to verify that all public symbols have docstrings (not including the module itself). This test is not enabled by default in test_all. (#313)

Version [v0.8.11] - 2025-02-06

Changed

  • Avoid deprecation warnings concerning Base.isbindingresolved with julia nightly. (#322)

Version [v0.8.10] - 2025-01-26

Changed

  • No longer call @testset for testsets that are skipped. (#319)

Version [v0.8.9] - 2024-10-15

Changed

... (truncated)

Commits
  • 37326ae Update changelog
  • 5c0da47 Bump version to v0.8.16
  • 429466e Fix for old julias
  • 7370f3f Adapt to various deprecations around Type{T} in julia nightly (#381)
  • e1cd164 Bump julia-actions/setup-julia from 2 to 3 (#373)
  • a5c4799 Fix Aqua.test_persistent_tasks() example (#371)
  • 7bb6287 Bump codecov/codecov-action from 5 to 6 (#372)
  • bd4a94e Bump julia-actions/cache from 2 to 3 (#370)
  • 552e170 Fix a MethodError when ambiguities are detected (#366)
  • 25c72ad use more precise structural inspection of types for ambiguity exclusions (#327)
  • Additional commits viewable in compare view

Updates Libtask to 0.9.17

Release notes

Sourced from Libtask's releases.

v0.9.17

Libtask v0.9.17

Diff since v0.9.16

Further improve performance by dropping unused Refs from the tape entirely.

Merged pull requests:

Changelog

Sourced from Libtask's changelog.

0.9.17

Further improve performance by dropping unused Refs from the tape entirely.

0.9.16

Improve performance by removing unnecessary set_ref_at! / get_ref_at calls.

0.9.15

Improve Libtask's handling of non-const global variables. Previously, usage of non-const globals in a TapedTask would cause Libtask to throw an "Unbound GlobalRef not allowed in value position" error. They should now work, and you can mutate global variables between calls to consume.

0.9.14

Added the Libtask.might_produce_if_sig_contains method.

0.9.13

Fix a bug where SSA registers in throw_undef_if_not expressions were not being correctly handled. This affected TapedTasks where the underlying function had variables that were conditionally defined.

Also adds an internal function, Libtask.generate_ir, which is useful for debugging. This is not part of the public API; however if you are developing Libtask it is a useful function for quickly inspecting the IR that Libtask generates, both pre- and post-optimisation.

0.9.12

Added a new method, Libtask.get_taped_globals(tt::TapedTask). This method extracts the taped globals stored inside tt.

Note that this is distinct from the existing method Libtask.get_taped_globals(::Type{T}) where {T}. That method is meant for being called inside a TapedTask, and it extracts the taped globals from the task that it is currently inside.

This PR also improves the error message for the latter method. When calling Libtask.get_taped_globals(::Type{T}) where {T} outside of a TapedTask, this now throws a Libtask.NotInTapedTaskError (which can be specifically caught) and shows a better error message.

0.9.11

When constructing a TapedTask with a method that will error when run (e.g. method doesn't exist, or is ambiguous) a more helpful error is shown.

0.9.10

Fix a bug introduced in 0.9.9 that made certain phi nodes with Union types fail a type assertion.

0.9.9

Remove manual opaque closure optimisation functions in favour of setting the world age and letting the compiler do more work for us, and providing it with some more type information. This changes no functionality, and shouldn't change performance either, but simplifies code.

0.9.8

... (truncated)

Commits

Updates StableRNGs to 1.0.4

Commits
  • fc6df37 copy-in Random.ltm52 which was deleted from Random (for shuffle) (#35)
  • dcc5201 add 1.9, 1.10, 1.11 to CI, and rm 1.4 on macOS (#28)
  • a584e78 Create dependabot.yml and update action versions (#31)
  • f1b00d7 Bump version (#34)
  • f626dcb import Random.Sampler (#30)
  • 147f522 Update badges on README.md (#27)
  • 18aa75f Fix method ambiguity error of shuffle! with AbstractArray{Bool} on Julia ...
  • 7e5c4a8 Fix streams of randn and randexp on Julia >= 1.11 (#22)
  • 9af20f9 add TagBot.yml file (#21)
  • d4f375f Add weekly CI run (#19)
  • Additional commits viewable in compare view

Updates Turing to 0.45.0

Release notes

Sourced from Turing's releases.

v0.45.0

Turing v0.45.0

Diff since v0.44.5

Breaking changes

Make FlexiChains the default chain type for MCMC sampling.

MCMCChains is still fully supported: you can specify chain_type=MCMCChains.Chains in the sample function to use it instead. However, it is no longer loaded as a dependency of Turing and re-exported (it is now an extension). That means that if you were previously importing MCMCChains via Turing, you will now have to import it directly.

Merged pull requests:

Closed issues:

  • Rework sample() call stack to use LogDensityFunction (#2555)
Changelog

Sourced from Turing's changelog.

0.45.0

Breaking changes

Make FlexiChains the default chain type for MCMC sampling.

MCMCChains is still fully supported: you can specify chain_type=MCMCChains.Chains in the sample function to use it instead. However, it is no longer loaded as a dependency of Turing and re-exported (it is now an extension). That means that if you were previously importing MCMCChains via Turing, you will now have to import it directly.

0.44.5

Allow users to disable the post-sample hook by passing verbose=false keyword argument to sample.

0.44.4

Add post-sampling warning message when there are divergent transitions with HMC, NUTS or HMCDA.

0.44.3

Add compatibility with SciMLBase v3.

0.44.2

Fix a bug in v0.44 where extra keyword arguments passed to vi (e.g. callback) would cause Turing to error.

0.44.1

Re-export pointwise_logdensities and pointwise_prior_logdensities from DynamicPPL.

0.44.0

Breaking changes

Variational inference interface

The VI interface in Turing has been modified to make it more interoperable with the rest of Turing.

  • The arguments to vi(...) are slightly different: instead of specifying a q_init argument (the initial variational approximation), you now directly pass a function that constructs this for you. For example, instead of

    q_init = q_meanfield_gaussian(model)
vi(model, q_init, n_iters)

    you would now do

    vi(model, q_meanfield_gaussian, n_iters)

... (truncated)

Commits

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@dependabot
Bump the all-julia-packages group across 4 directories with 6 updates
5d15b37 
Updates the requirements on [Libtask](https://github.com/TuringLang/Libtask.jl), [Chairmarks](https://github.com/LilithHafner/Chairmarks.jl), [Documenter](https://github.com/JuliaDocs/Documenter.jl), [Aqua](https://github.com/JuliaTesting/Aqua.jl), [StableRNGs](https://github.com/JuliaRandom/StableRNGs.jl) and [Turing](https://github.com/TuringLang/Turing.jl) to permit the latest version.

Updates `Libtask` to 0.9.17
- [Release notes](https://github.com/TuringLang/Libtask.jl/releases)
- [Changelog](https://github.com/TuringLang/Libtask.jl/blob/main/HISTORY.md)
- [Commits](v0.1.1...v0.9.17)

Updates `Chairmarks` to 1.3.1
- [Release notes](https://github.com/LilithHafner/Chairmarks.jl/releases)
- [Commits](LilithHafner/Chairmarks.jl@v0.1.0...v1.3.1)

Updates `Libtask` to 0.9.17
- [Release notes](https://github.com/TuringLang/Libtask.jl/releases)
- [Changelog](https://github.com/TuringLang/Libtask.jl/blob/main/HISTORY.md)
- [Commits](v0.1.1...v0.9.17)

Updates `Documenter` to 1.17.0
- [Release notes](https://github.com/JuliaDocs/Documenter.jl/releases)
- [Changelog](https://github.com/JuliaDocs/Documenter.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/Documenter.jl@v0.1.0...v1.17.0)

Updates `Libtask` to 0.9.17
- [Release notes](https://github.com/TuringLang/Libtask.jl/releases)
- [Changelog](https://github.com/TuringLang/Libtask.jl/blob/main/HISTORY.md)
- [Commits](v0.1.1...v0.9.17)

Updates `Aqua` to 0.8.16
- [Release notes](https://github.com/JuliaTesting/Aqua.jl/releases)
- [Changelog](https://github.com/JuliaTesting/Aqua.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaTesting/Aqua.jl@v0.1.0...v0.8.16)

Updates `Libtask` to 0.9.17
- [Release notes](https://github.com/TuringLang/Libtask.jl/releases)
- [Changelog](https://github.com/TuringLang/Libtask.jl/blob/main/HISTORY.md)
- [Commits](v0.1.1...v0.9.17)

Updates `StableRNGs` to 1.0.4
- [Release notes](https://github.com/JuliaRandom/StableRNGs.jl/releases)
- [Commits](JuliaRandom/StableRNGs.jl@v0.1.0...v1.0.4)

Updates `Turing` to 0.45.0
- [Release notes](https://github.com/TuringLang/Turing.jl/releases)
- [Changelog](https://github.com/TuringLang/Turing.jl/blob/main/HISTORY.md)
- [Commits](TuringLang/Turing.jl@v0.0.1...v0.45.0)

---
updated-dependencies:
- dependency-name: Libtask
  dependency-version: 0.9.17
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Chairmarks
  dependency-version: 1.3.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Libtask
  dependency-version: 0.9.17
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Documenter
  dependency-version: 1.17.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Libtask
  dependency-version: 0.9.17
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Aqua
  dependency-version: 0.8.16
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Libtask
  dependency-version: 0.9.17
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StableRNGs
  dependency-version: 1.0.4
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Turing
  dependency-version: 0.45.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Jun 5, 2026
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Libtask.jl documentation for PR #230 is available at:
https://TuringLang.github.io/Libtask.jl/previews/PR230/

@yebai yebai merged commit d214e7f into main Jun 8, 2026
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@yebai yebai deleted the dependabot/julia/benchmarks/all-julia-packages-4a63927e2b branch June 8, 2026 15:51
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