Add fusion transcript detection pipeline (--fusion)#383
Open
solatar wants to merge 90 commits intoablab:fusionfrom
Open
Add fusion transcript detection pipeline (--fusion)#383solatar wants to merge 90 commits intoablab:fusionfrom
solatar wants to merge 90 commits intoablab:fusionfrom
Conversation
Added information about fusion transcript detection feature.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fusion detection consists of classes fusion_detector, fusion_metadata, fusion_validator and genomic_interval_index. Additional requirements are in requirements_fusion.txt and an example command is in Readme. Tests will come later.