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Bump the pre-commit-hooks group across 1 directory with 10 updates #456

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Merged
d33bs merged 7 commits into from
Jun 3, 2026
+249 −270
Merged

Bump the pre-commit-hooks group across 1 directory with 10 updates #456

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a336d6c
Bump the pre-commit-hooks group with 10 updates
dependabot[bot] Jun 1, 2026
60eace5
Bump the pre-commit-hooks group across 1 directory with 10 updates
dependabot[bot] Jun 2, 2026
30f9e16
Merge branch 'dependabot/pre_commit/pre-commit-hooks-dcc36ec642' of h…
d33bs Jun 2, 2026
0ece703
[pre-commit.ci lite] apply automatic fixes
pre-commit-ci-lite[bot] Jun 2, 2026
56c9e59
linting and constraint for pyproject fmting
d33bs Jun 2, 2026
e9ad43b
Merge branch 'dependabot/pre_commit/pre-commit-hooks-dcc36ec642' of h…
d33bs Jun 2, 2026
2ade2fc
Update pyproject.toml
d33bs Jun 2, 2026
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2 changes: 2 additions & 0 deletions .github/dependabot.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -36,6 +36,8 @@ updates:
interval: "monthly"
cooldown:
default-days: 7
ignore:
- dependency-name: "https://github.com/tox-dev/pyproject-fmt"
groups:
pre-commit-hooks:
patterns:
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18 changes: 9 additions & 9 deletions .pre-commit-config.yaml
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Expand Up @@ -29,7 +29,7 @@ repos:
additional_dependencies:
- tomli
- repo: https://github.com/executablebooks/mdformat
rev: 0.7.18
rev: 1.0.0
hooks:
- id: mdformat
additional_dependencies:
Expand Down Expand Up @@ -73,7 +73,7 @@ repos:
cytotable_from_the_cloud\.py$
)
- repo: https://github.com/citation-file-format/cffconvert
rev: 5295f87c0e261da61a7b919fc754e3a77edd98a7
rev: b6045d78aac9e02b039703b030588d54d53262ac
hooks:
- id: validate-cff
- repo: https://github.com/software-gardening/almanack
Expand All @@ -98,11 +98,11 @@ repos:
# pylint due to it's dynamic analysis capabilities
# and the way pre-commit references virtual environments.
additional_dependencies:
- "cloudpathlib[all]>=0.13.0"
- "pyarrow>=13.0.0"
- "pytest>=7.2.0"
- "moto[server,s3]>=4.0.0,<5.0.0"
- "duckdb>=0.8.0"
- "parsl>=2023.4.24"
- "pycytominer>=1.2.4"
- "cloudpathlib[all]>=0.24.0"
- "pyarrow>=24.0.0"
- "pytest>=9.0.3"
- "moto[server,s3]>=5.2.1,<6.0.0"
- "duckdb>=1.5.3"
- "parsl>=2026.5.18"
- "pycytominer>=1.5.0"
- "anndata"
2 changes: 1 addition & 1 deletion docs/source/presentations.md
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Expand Up @@ -15,7 +15,7 @@ We presented these slides for a lightning talk at [ParslFest 2025](https://parsl

[![Poster DOI badge](https://img.shields.io/badge/Poster_DOI-10.5281/zenodo.16945320-blue)](https://doi.org/10.5281/zenodo.16945320)

We presented this poster at [SBI<sup>2</sup>](https://sbi2.org/) 2023 in Boston, MA.
We presented this poster at [SBI<sup>2</sup>](https://sbi2.org/) 2023 in Boston, MA.

<iframe src="_static/presentations/cytotable_sbi2_2023.pdf" width="100%" height="600px"></iframe>

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