Scripts

bash scripts used for bioinformatics analysis as batch and bash scripts and interactive commands

Name		Name	Last commit message	Last commit date
.gitattributes		.gitattributes
Planemo.sh		Planemo.sh
README.md		README.md
Tutorial_workflow.sh		Tutorial_workflow.sh
abyss.sh		abyss.sh
allign.bash		allign.bash
basic_dockerfile.bash		basic_dockerfile.bash
batch.sbatch		batch.sbatch
bedtools_basic.bash		bedtools_basic.bash
blast.sh		blast.sh
diff_expre.bash		diff_expre.bash
fast_multiqc.sh		fast_multiqc.sh
hisat.sh		hisat.sh
hisat2.sh		hisat2.sh
irod.sh		irod.sh
jellyfish_full.sh		jellyfish_full.sh
jellyfish_velvet.sh		jellyfish_velvet.sh
kall_mom.sh		kall_mom.sh
mammoth_job.sh		mammoth_job.sh
map_mom.sh		map_mom.sh
map_sam_bam.sh		map_sam_bam.sh
mod4.sh		mod4.sh
mothur.sh		mothur.sh
network_cmd.bash		network_cmd.bash
qiime2.bash		qiime2.bash
qiime2_classify_rep_seqs.sbatch		qiime2_classify_rep_seqs.sbatch
qiime2_workflow.sbatch		qiime2_workflow.sbatch
qiime_limidb.sh		qiime_limidb.sh
quast.sh		quast.sh
script_map.sh		script_map.sh
shell_script_phyml.sh		shell_script_phyml.sh
snp_call.bash		snp_call.bash
soap.sh		soap.sh
soap_allign_hpc.bash		soap_allign_hpc.bash
soap_basic.bash		soap_basic.bash
splice_map.bash		splice_map.bash
star.sh		star.sh
tassel_workthrough.sh		tassel_workthrough.sh
tophat.sh		tophat.sh
trim.sh		trim.sh
trim_auto.sh		trim_auto.sh
trim_auto_2_file.sh		trim_auto_2_file.sh
trim_basic_auto.sh		trim_basic_auto.sh
velvet.sh		velvet.sh
velvet_for.sh		velvet_for.sh
wget_bash.sh		wget_bash.sh
workth.sh		workth.sh