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Good gravy. Too much to do.
😎
Good gravy. Too much to do.
84 followers · 37 following

Achievements

Achievement: Pair Extraordinairex3Achievement: StarstruckAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair Extraordinairex3Achievement: StarstruckAchievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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@AllTheBacteria

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happykhan/README.md

Nabil-Fareed Alikhan

Bioinformatics researcher and software developer · University of Oxford

I write software for microbial genomics; desktop tools, web apps, browser-native bioinformatics via WebAssembly, and data pipelines. My tools have accumulated 4000+ citations.

Languages: Python · JavaScript · TypeScript · Java · Go · R · Bash

Projects

Project Stack What it does
GrapeTree Python · JS Minimum spanning tree visualisation for large genome collections · ⭐ 87
BRIG Java Cross-platform circular genome comparisons via BLAST · ⭐ 47 · 3,000+ citations
QualiBact Python Species-specific genome assembly QC thresholds · ⭐ 14

GitHub stats

Web: happykhan.com · Email: nabil@happykhan.com · ORCID: 0000-0002-1243-0767

Popular repositories Loading

  1. BRIG BRIG Public

    BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.

    Java 47 8

  2. qualibact qualibact Public

    QC cutoffs for different genomes.

    Python 14 2

  3. speccheck speccheck Public

    A bioinformatics software focused on quality control based on species criteria

    Python 11 2

  4. seqhandler seqhandler Public

    Python 5 3

  5. binCrisp binCrisp Public

    Find CRISPRS in genomes using pilercr & draws a matrix

    Python 5 3

  6. subhelper subhelper Public

    helper scripts for submission to ena (microbial + sarscov2) and gisaid (sarscov2 only)

    Python 5 1