v0.0.9

• Removed unnecessary deprecated code and config files.
• Updates documents.

v0.0.8

• Removes the default docker registry. User must specify from which docker registry the necessary docker images will be obtained.
• Minor non-functional updates.

v0.0.7

• Renamed input variable names to avoid confusion and updated the docs accordingly.
• Uses seqc-utils:0.5.2
• Refactored for SCING integration.

v0.0.6

• Parameterized Docker registry to support AWS ECR or others.

v0.0.5

• TagBam2 outputs stats.csv.
• Uses seqc-utils:0.4.10.
• Instructions updated for generating job file for snRNA-seq samples.

v0.0.4

• Uses seqc-utils:0.4.8 for TagBam2.
• Code refactor/restructure.

v0.0.3

• Corrects cellular barcodes on the fly (seqc-utils v0.4.3).
• A better way to handle sorted BAM (position sorted, cellbarcode sorted)
• Supports multiple ways of extracting filtered barcodes (from dense matrix, sparse matrix, and Cell Ranger output)

v0.0.2

• Uncomment the disk clause from the WDL since AWS does auto-disk scaling.
• Make .bai optional.
• Add instructions on how to create a job file.

v0.0.1

Initial release