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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps-dev): bump eslint-plugin-astro from 1.7.0 to 3.1.0 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7042 opened Aug 5, 2026 by dependabot Bot Loading…
chore(deps-dev): bump the patch group in /website with 3 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7041 opened Aug 5, 2026 by dependabot Bot Loading…
chore(deps): bump lewagon/wait-on-check-action from 1.8.1 to 1.9.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#7040 opened Aug 5, 2026 by dependabot Bot Loading…
chore(deps-dev): bump vite from 8.1.5 to 8.2.0 in /website in the minor group dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7039 opened Aug 5, 2026 by dependabot Bot Loading…
feat(website): show SeqSet citation formats on the page instead of in a modal preview Triggers a deployment to argocd website Tasks related to the web application
#7038 opened Aug 5, 2026 by corneliusroemer Contributor • Draft
3 tasks
fix(deployment): fix schema docs annotations and guard them in CI deployment Code changes targetting the deployment infrastructure
#7035 opened Aug 5, 2026 by corneliusroemer Contributor Loading…
5
feat!(helm): Allow full customization of urls and ingress, move network settings under networking deployment Code changes targetting the deployment infrastructure feature Feature proposal preview Triggers a deployment to argocd
#7034 opened Aug 5, 2026 by corneliusroemer Contributor Loading…
2 tasks
3
feat(kubernetes): add support for podSecurityContext and containerSecurityContext configurations
#7033 opened Aug 5, 2026 by florianzwagemaker Contributor Loading…
1
3
chore(deps): bump the minorandpatch group across 1 directory with 6 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7019 opened Aug 1, 2026 by dependabot Bot Loading…
feat(deposition): split and move out functions to be reused in raw reads, improve manifest creation code, fix bug in assembly revision code deposition related to ENA/INSDC deposition
#7017 opened Jul 31, 2026 by anna-parker Contributor Loading…
2 tasks done
13
fix(backend): Add current date to etag that's used in get-released-data backend related to the loculus backend component
#7015 opened Jul 31, 2026 by maverbiest Contributor Loading…
2 tasks done
1
1
Bulk submission cleanup backend related to the loculus backend component
#7012 opened Jul 30, 2026 by anna-parker Contributor • Draft
3 tasks
1
docs: add security policy
#7011 opened Jul 30, 2026 by snehasaisneha Member Loading…
1
@snehasaisneha
15
chore(deps): bump react-dom and @types/react-dom in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7010 opened Jul 29, 2026 by dependabot Bot Loading…
chore(deps-dev): bump the minorandpatch group across 1 directory with 3 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#7007 opened Jul 29, 2026 by dependabot Bot Loading…
feat(file-processing): prevent submission of interleaved fastq files backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component website Tasks related to the web application
#7001 opened Jul 28, 2026 by anna-parker Contributor • Draft
3 tasks
1
fix(auth): harden OIDC login flow and redirect handling deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6994 opened Jul 27, 2026 by snehasaisneha Member Loading…
@snehasaisneha
7
feat(deposition): use foreign key constraints and use ORM with transactions and joins in more places deposition related to ENA/INSDC deposition
#6989 opened Jul 26, 2026 by anna-parker Contributor • Draft
3 tasks
1
fix(backend): display preprint servers in citations backend related to the loculus backend component
#6982 opened Jul 24, 2026 by theosanderson Member • Draft
1
7
feat(ingest): enrich mirrored GenBank metadata
#6981 opened Jul 24, 2026 by theosanderson Member • Draft
12
feat(prepro): refactor - split args into function args and entry-specific level, internally supplied context arguments which are now fully typed preprocessing Issues related to the preprocessing component
#6980 opened Jul 24, 2026 by anna-parker Contributor Loading…
3 tasks
12
chore(backend): Upgrade spring boot from v3.5 to v4, exposed from v0.61 to v1 backend related to the loculus backend component
#6974 opened Jul 23, 2026 by tombch Collaborator • Draft
3 tasks
4
feat(website): revise defaults to single-sequence form (bulk-first tabs, Preview tag) preview Triggers a deployment to argocd
#6973 opened Jul 23, 2026 by theosanderson-agent Collaborator • Draft
3
feat(website): default revision to the single sequence form preview Triggers a deployment to argocd website Tasks related to the web application
#6964 opened Jul 22, 2026 by theosanderson-agent Collaborator Loading…
14
chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6959 opened Jul 22, 2026 by dependabot Bot Loading…
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