Repositories list

• GeographicGeneticCorrelation

  Public
  Measuring the correlation between metrics of genetic, geographic, and ecological coverage.

  rgisplants+ 2

  rgisplantsconservationresampling

  R

  •00 forks•22 stars•44 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• QUBR_GenGeoEcoDemoCorr

  Public
  Looking for correlations in the genetics, geography, ecology, and demographics of Quercus brandegeei

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• butternut-health-assessment-2025

  Public
  This code analyzes the butternut health assessment (2025 version) data and seeks to understand the ecological conditions where butternuts survive and thrive.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• QUTA_TxRedOaks

  Public
  Population genetic and hybridization analyses of Quercus tardifolia and Texas red oaks

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• QUBR_exsitu_gen_diversity

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 2, 2026Jan 2, 2026

• Morton_SSRvSNP_Simulations

  Public
  Scripts and parameters for generating/analyzing fastSimcoal2 simulations, as part of the IMLS_GCCO project comparing ex situ conservation measures between SNP a…

  dna-sequencesmicrosatellite-datastratag

  dna-sequencesmicrosatellite-datastratag

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 28, 2025Aug 28, 2025

• PhenotypeConsistencyCheck

  Public
  Script that analyzes how consistent the initial set of measurements compare to the final set of measurements fro traits of Butternut (Juglans cinerea)

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2025May 6, 2025

• USBG_Hybrid_Acorns

  Public
  Analyzing the offspring of 11 Quercus muehlenbergii individuals at the Morton Arboretum for hybridization and predictors of pollination success.

  popgenhybrids

  popgenhybrids

  HTML

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 9, 2025Mar 9, 2025

• Salas_RaMP_ResamplingPredictionIntervals

  Public
  Generating confidences intervals around minimum sample size estimates

  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 7, 2024Nov 7, 2024

• Ten_Oaks

  Public
  Genetic diversity and structure code for 10 species of rare and endangered oak species.

  geneticdiversityseedsourcing

  geneticdiversityseedsourcing

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2024Sep 12, 2024

• Morton_SSRvSNP_Empirical

  Public
  Generation of RADseq markers for 2 rare Quercus spp., and how ex situ conservation measures with these markers compare to those generated with microsatellites

  rconservationstacks+ 3

  rconservationstacksradseq-dataquercusexsitu

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 1, 2024Jul 1, 2024

• IMLS_GCC_QUAC_ZAIN

  Public
  An analysis of genetic diversity representation in botanic gardens of a rare oak species and a rare cycad species

  conservationgenetic-diversityconservation-genetics+ 1

  conservationgenetic-diversityconservation-geneticsbotanic-gardens

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 26, 2024Jan 26, 2024

• Pollen_dispersal_sims

  Public
  Simulating complex pollen dispersal and mating to Simcoal2 simulations

  R

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2023Nov 17, 2023

• ggplot2_intro_and_walkthrough

  Public
  A short introduction to ggplot2

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2023Sep 6, 2023

• Butternut

  Public
  Identifying the influence of past range shifts of the rare butternut tree using genetic diversity, geographic locations, and species distribution modeling.

  diversitygeneticbutternut+ 2

  diversitygeneticbutternutsdmssean-hoban

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 28, 2023Jul 28, 2023

• Morton-REU

  Public
  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 23, 2023Apr 23, 2023

• Quercus_IUCN_samp_sims

  Public
  Repository storing code, simulation, and parameter files that represent IUCN Red List endangered oaks

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 23, 2023Apr 23, 2023

• Quercus_havardii_Safeguarding_genetic_diversity

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2023Apr 20, 2023

• Q_havardii_GeoEco_exsitu_conservation

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2023Mar 17, 2023

• .github

  Public
  Files for formatting public GH organization page

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2023Mar 16, 2023

• Qhavardii_ex_situ

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2022Apr 7, 2022

• QUHA_EW_Hyb

  Public
  Code for determining the history of the rare species, Quercus havardii, and possible parental hybrids

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 8, 2021Dec 8, 2021

• SE_oaks_genetics

  Public
  Population genetic analysis of southeastern oaks Q georgiana, boyntonii, oglethorpensis

  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2021Feb 15, 2021

• Quercus_havardii_Forests_Manuscript

  Public
  Environmental analyses for Quercus havardii 2019 data

  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• IMLS_Safeguarding

  Public
  Code and files for Safeguarding Plant Genetic Diversity Project

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2020Mar 18, 2020