Port the system tests to Ubuntu 26.04

tools/tests/README.md

@@ -364,7 +364,7 @@ openfoam-adapter:
   template: component-templates/openfoam-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"

tools/tests/components.yaml

@@ -2,7 +2,7 @@ bare: # A default component used when the solver does not have any dependencies
   template: component-templates/bare.yaml
   build_arguments: # these things mean something to the docker-service
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -16,7 +16,7 @@ calculix-adapter:
   template: component-templates/calculix-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -35,7 +35,7 @@ dealii-adapter:
   template: component-templates/dealii-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -53,7 +53,7 @@ dumux-adapter:
   build_timeout: 900
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -75,7 +75,7 @@ dune-adapter:
   build_timeout: 900
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -97,7 +97,7 @@ solids4foam:
   build_arguments:
     PLATFORM:
       description: Dockerfile platform used
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
       # The name "PLATFORM" is misleading: For this component, we use a different base image.
     TUTORIALS_REF:
       description: Tutorial git reference to use
@@ -108,9 +108,10 @@ solids4foam:
 
 fenics-adapter:
   template: component-templates/fenics-adapter.yaml
+  build_timeout: 600
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -130,7 +131,7 @@ fenicsx-adapter:
   template: component-templates/fenicsx-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -148,9 +149,10 @@ fenicsx-adapter:
 
 fmi-runner:
   template: component-templates/fmi-runner.yaml
+  build_timeout: 600
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -170,7 +172,7 @@ mercurydpm-adapter:
   template: component-templates/mercurydpm-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -184,7 +186,7 @@ micro-manager:
   template: component-templates/micro-manager.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -199,9 +201,10 @@ micro-manager:
 
 nutils-adapter:
   template: component-templates/nutils-adapter.yaml
+  build_timeout: 600
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -218,7 +221,7 @@ openfoam-adapter:
   template: component-templates/openfoam-adapter.yaml
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -235,9 +238,10 @@ openfoam-adapter:
 
 python-bindings:
   template: component-templates/python-bindings.yaml
+  build_timeout: 600
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -252,10 +256,10 @@ python-bindings:
 
 su2-adapter:
   template: component-templates/su2-adapter.yaml
-  build_timeout: 600
+  build_timeout: 900
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
     PRECICE_REF:
       repository: https://github.com/precice/precice
       default: "develop"
@@ -275,7 +279,7 @@ aste:
   build_timeout: 600
   build_arguments:
     PLATFORM:
-      default: "ubuntu_2404"
+      default: "ubuntu_2604"
       # The name "PLATFORM" is misleading: For this component, we use a different base image.
     PRECICE_REF:
       repository: https://github.com/precice/precice

tools/tests/dockerfiles/ubuntu_2404/Dockerfile → tools/tests/dockerfiles/ubuntu_2604/Dockerfile

@@ -1,4 +1,4 @@
-FROM ubuntu:24.04 AS base_image
+FROM ubuntu:26.04 AS base_image
 # We set a senseful value, but still have the possibility to influence this via the build time arguments. 
 # When the dockerfile is built using the systemtests.py we set the PRECICE_UID and PRECICE_GID to the user executing the system tests.
 # This ensures no file ownership problems down the line and is the easiest fix, as we normally build the containers locally
@@ -99,6 +99,40 @@ ENV CMAKE_PREFIX_PATH="/home/precice/.local"
 ### end of precice stage ###
 
 
+FROM precice AS aste
+
+ARG ASTE_PR
+ARG ASTE_REF
+
+USER root
+RUN apt-get -qq update && \
+    apt-get -qq -y install \
+        libmetis-dev \
+        libvtk9-dev
+
+USER precice
+WORKDIR /home/precice
+
+RUN git clone https://github.com/precice/aste.git aste && \
+    cd aste && \
+    if [ -n "${ASTE_PR}" ]; then git fetch origin pull/${ASTE_PR}/head; fi && \
+    git checkout ${ASTE_REF}
+
+RUN python3 -m venv /home/precice/venv && \
+    . /home/precice/venv/bin/activate && \
+    pip install -r /home/precice/aste/requirements.txt && \
+    pip install vtk
+
+RUN cd /home/precice/aste && \
+    mkdir build && cd build &&\
+    cmake .. -DCMAKE_INSTALL_PREFIX=/home/precice/.local/ && \
+    make all install -j $(nproc) && \
+    cd ../.. && rm -rf aste
+
+WORKDIR /home/precice
+### end of aste stage ###
+
+
 FROM precice AS python_bindings
 ARG PYTHON_BINDINGS_PR
 ARG PYTHON_BINDINGS_REF
@@ -251,6 +285,8 @@ RUN for i in $(seq 1 3); do \
         if [[ $i -eq 3 ]]; then exit 1; fi; \
         sleep 10; \
     done
+# Patch dumux-phasefield for Ubuntu 26.04
+RUN sed -i s/VERSION\ 3.1/VERSION\ 3.13/g dumux-phasefield/CMakeLists.txt
 RUN ./dune-common/bin/dunecontrol --opts=./dumux/cmake.opts cmake &&\
     ./dune-common/bin/dunecontrol make -j $(nproc)
 
@@ -355,9 +391,8 @@ COPY --from=python_bindings /home/precice/.local /home/precice/.local
 ARG FENICS_ADAPTER_REF
 
 USER root
-RUN add-apt-repository -y ppa:fenics-packages/fenics && \
-    apt-get -qq update && \
-    apt-get -qq install --no-install-recommends fenics
+RUN apt-get -qq update && \
+    apt-get -qq install fenics
 
 USER precice
 RUN python3 -m venv --system-site-packages /home/precice/venv && \
@@ -371,9 +406,8 @@ COPY --from=python_bindings /home/precice/.local /home/precice/.local
 ARG FENICSX_ADAPTER_REF
 
 USER root
-RUN add-apt-repository -y ppa:fenics-packages/fenics && \
-    apt-get -qq update && \
-    apt-get -qq install --no-install-recommends fenicsx
+RUN apt-get -qq update && \
+    apt-get -qq install fenicsx
 
 USER precice
 RUN python3 -m venv --system-site-packages /home/precice/venv && \
@@ -432,17 +466,14 @@ RUN apt-get -qq update && \
 USER precice
 WORKDIR /home/precice
 # Download and build SU2 (We could also use pre-built binaries from the SU2 releases)
-# The sed command applies a patch needed for Ubuntu 24.04.
-RUN wget -nv https://github.com/su2code/SU2/archive/refs/tags/v${SU2_VERSION}.tar.gz && \
-    tar xvzf v${SU2_VERSION}.tar.gz && \
-    rm -fv v${SU2_VERSION}.tar.gz
+RUN git clone --depth=1 --branch=v${SU2_VERSION} --recurse-submodules https://github.com/su2code/SU2.git
 RUN python3 -m venv /home/precice/venv && \
     . /home/precice/venv/bin/activate
 
 # Some of these variables are used by the scripts that follow
 WORKDIR /home/precice
 ENV SU2_RUN="/home/precice/SU2_RUN" 
-ENV SU2_HOME="/home/precice/SU2-${SU2_VERSION}"
+ENV SU2_HOME="/home/precice/SU2"
 ENV PATH="/home/precice/su2-adapter/run:$SU2_RUN:$PATH"
 ENV PYTHONPATH="$SU2_RUN:$PYTHONPATH"
 
@@ -451,9 +482,14 @@ RUN git clone https://github.com/precice/su2-adapter.git && \
     if [ -n "${SU2_ADAPTER_PR}" ]; then git fetch origin pull/${SU2_ADAPTER_PR}/head; fi && \
     git checkout ${SU2_ADAPTER_REF} &&\
     ./su2AdapterInstall
+
+# Build the modified SU2.
+# The sed commands apply patches needed for newer systems.
 RUN cd "${SU2_HOME}" &&\
     sed -i '1s/^/#include <cstdint>\n/' SU2_CFD/src/output/filewriter/CParaviewXMLFileWriter.cpp &&\
-    ./meson.py build -Denable-pywrapper=true --prefix=$SU2_RUN &&\
+    sed -i '1s/^/#include <cstdint>\n/' SU2_CFD/src/SU2_CFD.cpp &&\
+    sed -i 's/pipes/shlex/g' externals/ninja/configure.py &&\
+    ./meson.py build -Denable-pywrapper=true -Denable-cgns=false -Denable-tecio=false --prefix=$SU2_RUN &&\
     ./ninja -C build install
 ### end of su2_adapter stage ###
 
@@ -463,113 +499,7 @@ RUN cd "${SU2_HOME}" &&\
 #####################################################################
 
 
-FROM ubuntu:26.04 AS aste
-
-ARG PRECICE_UID=1000
-ARG PRECICE_GID=1000
-ARG PRECICE_PR
-ARG PRECICE_REF
-ARG PRECICE_PRESET
-ARG ASTE_PR
-ARG ASTE_REF
-
-USER root
-SHELL ["/bin/bash", "-c"]
-ENV DEBIAN_FRONTEND=noninteractive
-
-# Set the same user as the rest of the system tests components, for consistency.
-RUN set -eux; \
-    if getent group "${PRECICE_GID}" >/dev/null; then \
-        existing_group="$(getent group "${PRECICE_GID}" | cut -d: -f1)"; \
-        if [ "${existing_group}" != "precice" ]; then \
-            groupmod -n precice "${existing_group}"; \
-        fi; \
-    else \
-        groupadd -g "${PRECICE_GID}" precice; \
-    fi; \
-    if getent passwd "${PRECICE_UID}" >/dev/null; then \
-        existing_user="$(getent passwd "${PRECICE_UID}" | cut -d: -f1)"; \
-        if [ "${existing_user}" != "precice" ]; then \
-            usermod -l precice -d /home/precice -m "${existing_user}"; \
-        fi; \
-        usermod -g "${PRECICE_GID}" precice; \
-    else \
-        useradd -u "${PRECICE_UID}" -g "${PRECICE_GID}" -ms /bin/bash precice; \
-    fi; \
-    mkdir -p /home/precice; \
-    chown -R "${PRECICE_UID}:${PRECICE_GID}" /home/precice
-
-# Dependencies for preCICE and common dependencies for the tutorials/tests
-RUN apt-get -qq update && \
-    apt-get -qq -y install \
-        build-essential \
-        software-properties-common \
-        cmake \
-        curl \
-        g++ \
-        gfortran \
-        git \
-        libbenchmark-dev \
-        libboost-all-dev \
-        libeigen3-dev \
-        libopenmpi-dev \
-        libxml2-dev \
-        lsb-release \
-        openmpi-bin \
-        petsc-dev \
-        python3-dev \
-        python3-numpy \
-        python3-pip \
-        python3-venv \
-        pkg-config \
-        wget \
-        inotify-tools
-
-# Additional dependencies for ASTE
-RUN apt-get -qq update && \
-    apt-get -qq -y install \
-        libmetis-dev \
-        libvtk9-dev
-
-USER precice
-WORKDIR /home/precice
-
-# Build & install precice into /home/precice/precice
-RUN git clone https://github.com/precice/precice.git precice && \
-    cd precice && \
-    if [ -n "${PRECICE_PR}" ]; then git fetch origin pull/${PRECICE_PR}/head; fi && \
-    git checkout ${PRECICE_REF} && \
-    mkdir build && cd build &&\
-    cmake .. --preset=${PRECICE_PRESET} -DCMAKE_INSTALL_PREFIX=/home/precice/.local/ -DBUILD_TESTING=OFF && \
-    make all install -j $(nproc) && \
-    cd ../.. && rm -rf precice
-
-ENV PATH="${PATH}:/home/precice/.local/bin" 
-ENV LD_LIBRARY_PATH="/home/precice/.local/lib"
-ENV CPATH="/home/precice/.local/include"
-ENV PKG_CONFIG_PATH="/home/precice/.local/lib/pkgconfig"
-ENV CMAKE_PREFIX_PATH="/home/precice/.local"
-
-RUN git clone https://github.com/precice/aste.git aste && \
-    cd aste && \
-    if [ -n "${ASTE_PR}" ]; then git fetch origin pull/${ASTE_PR}/head; fi && \
-    git checkout ${ASTE_REF}
-
-RUN python3 -m venv /home/precice/venv && \
-    . /home/precice/venv/bin/activate && \
-    pip install -r /home/precice/aste/requirements.txt && \
-    pip install vtk
-
-RUN cd /home/precice/aste && \
-    mkdir build && cd build &&\
-    cmake .. -DCMAKE_INSTALL_PREFIX=/home/precice/.local/ && \
-    make all install -j $(nproc) && \
-    cd ../.. && rm -rf aste
-
-WORKDIR /home/precice
-
-
-FROM solids4foam/solids4foam:v2.3-openfoam-v2412-latest as solids4foam
+FROM solids4foam/solids4foam:v2.3-openfoam-v2412-latest AS solids4foam
 
 ARG PRECICE_UID=1000
 ARG PRECICE_GID=1000