Update, review, tidy and fix across s/scripts and Docker setup#86

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pacharanero wants to merge 43 commits into

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update-review-fix-scripts-docker-compose

Commits on Jun 7, 2025

Commits on Jun 8, 2025

function to create fictional data by sds, use this to generate standards in R, add these to who tests
eatyourpeas
committed

Commits on Jun 15, 2025

Commits on Aug 5, 2025

adds bayley pinneau, temp lms function to compare WHO and UK-WHO
eatyourpeas
committed

Commits on Aug 14, 2025

adds temp lms comparison files between who and uk-who
eatyourpeas
committed

Commits on Aug 17, 2025

update the fetch_lms method to accept an `override_interpolation` parameter which defaults to False, but applies linear interpolation across the board if true. Adds comparisons between who daily an…
eatyourpeas
committed

Commits on Aug 30, 2025

add daily lms who files as json, functions to convert from csv to json
eatyourpeas
committed

Commits on Aug 31, 2025

reorganises folders to include WHO folder. Includes daily LMS for <5y, monthly for >5y as json, csv folder for the who csv files. adds a new function to parse the csv files either into individual j…
eatyourpeas
committed

Commits on Sep 10, 2025

updates who bmi sds calculation for who, adds 5y lms to under 5s, testing chart function bmi against gold standard charts
eatyourpeas
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Commits on Sep 11, 2025

bmi calculation for who - some failing tests
eatyourpeas
committed

Commits on Oct 7, 2025

refactor name to be more meaningful
eatyourpeas
committed

Commits on Nov 15, 2025

Commits on Jan 22, 2026

Commits on Jan 28, 2026

tests now passing for all who charts including bmi 0.1% and 99.9% centiles. Note that this involves disabling the WHO calculations >-3 and <-3 SD. We have no tests for measurement->SDS for this so …
eatyourpeas
committed

Commits on May 2, 2026

refactor test file name for who, linting in markdown files
eatyourpeas
committed

Commits on Jun 2, 2026

tidying and declutter of all Docker and Docker Compose setup, as part of fixing s/notebook - reviewed and tidied all the scripts while I'm here.
pacharanero
committed