Add cells tutorial#168
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Remove local cluster/home paths from cell outputs, drop the warnings.filterwarnings cell, and untrack pixi.toml so the PR contains only the create_cells_dataset notebook. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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- Register create_cells_dataset.ipynb in the Intermediate gallery section (fixes the RTD orphan-toctree warning under fail_on_warning) - Add 3:2 thumbnail for the gallery card - Localize paths in outputs, dedupe markdown, fix zarr write/read cell Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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This notebook describes the creation of the
cellsdataset which I hope ends up being a more biologically looking dataset that we can use for user-facing testing and small tutorials. Ideally it'd be distributed viaSpatialData, if out-of-scope it'll land viaSquidpy.I'm not sure where in the documentation it'd belong, but I feel like it should be public?