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Pull requests: scverse/squidpy

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Pull requests list

Parallelize spatial neighbors
#1198 opened Jun 3, 2026 by grst Contributor Loading…
5
Use Geary's C normality variance in spatial_autocorr (fixes #1183)
#1197 opened Jun 1, 2026 by gaoflow Loading…
1
1
Stain normalization: Macenko/Vahadane decomposition + background estimator
#1196 opened Jun 1, 2026 by timtreis Member Loading…
1
feat: stalign with a fit apply pattern. Also foundation for imputation
#1195 opened Jun 1, 2026 by selmanozleyen Member Loading…
[2/3] Add assign_stitch_groups (tile-cut stitching algorithm)
#1193 opened May 29, 2026 by timtreis Member Loading…
7
[2/4] Add calculate_image_features with skimage + squidpy-native features
#1190 opened May 27, 2026 by timtreis Member Loading…
13
Add spatialdata-plot delegation backend (gated by feature flag)
#1173 opened May 12, 2026 by timtreis Member • Draft
1
Add tile-cut stitching follow-up to calculate_tiling_qc
#1170 opened May 8, 2026 by timtreis Member Loading…
3
Draft: add contour-based ring density and smooth signed-distance density for SpatialData
#1163 opened Apr 16, 2026 by hutaobo • Draft
1
4
General purpose sq.tl.align() function with STAlign core logic
#1162 opened Apr 16, 2026 by timtreis Member Loading…
3
Feat/gene imputation
#1161 opened Apr 16, 2026 by MDLDan Contributor • Draft
2
Add pluggable backend dispatch system
#1151 opened Apr 7, 2026 by Intron7 Member • Draft
16
chore: ligrec add explicit reproducibility tests
#1132 opened Mar 2, 2026 by selmanozleyen Member Loading…
9
feat: remove ligrec parallelize
#1125 opened Feb 23, 2026 by selmanozleyen Member Loading…
@selmanozleyen
25
fix: require spatialdata>=0.7.2 to drop the xarray-schema/pkg_resources break
#1117 opened Feb 18, 2026 by timtreis Member Loading…
1
9
Improved sliding windows
#1116 opened Feb 10, 2026 by schrf Loading…
1
5
Experimental Feature: Function delegation to rapids_singlecell when gpu is available
#1093 opened Jan 14, 2026 by selmanozleyen Member • Draft
@selmanozleyen
22
Add new spatial graph features and tests (closes #901)
#1091 opened Jan 3, 2026 by luckyy14 Loading…
1
Update template to v0.7.0
#1090 opened Dec 24, 2025 by scverse-bot Contributor Loading…
Add Pytest Benchmarks Feature pytest-benchmark
#1070 opened Dec 1, 2025 by selmanozleyen Member • Draft
1
update var by dist normalization
#1065 opened Nov 20, 2025 by LLehner Member Loading…
5
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
5
Add COZI to nhood_enrichment()
#1023 opened Aug 12, 2025 by chiarasch Loading…
1 task done
@selmanozleyen
5
Adding Benchmarks benchmark enhancement ✨ New feature or request
#1016 opened Jul 10, 2025 by selmanozleyen Member Loading…
@flying-sheep @selmanozleyen
5
sq.pp.filter_cells for SpatialData
#1011 opened Jun 18, 2025 by selmanozleyen Member Loading…
1 task done
1
1
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