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chore: merge main #247

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Merged
eseiler merged 15 commits into from
Apr 23, 2026
Merged

chore: merge main #247

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9ac0729
[INFRA] Update CPM Packages
seqan-actions Jan 31, 2026
3eed8e8
Merge pull request #237 from seqan/actions/update_cpm_package_lock
eseiler Jan 31, 2026
c592a09
[INFRA] Update CPM Packages
seqan-actions Mar 1, 2026
9a3f4ce
Merge pull request #238 from seqan/actions/update_cpm_package_lock
eseiler Mar 1, 2026
f2a1d90
Bump actions/upload-artifact from 6 to 7
dependabot[bot] Mar 2, 2026
562b0a9
Merge pull request #239 from seqan/dependabot/github_actions/actions/…
eseiler Mar 2, 2026
4da1843
chore(deps): update CPM packages
seqan-actions Mar 19, 2026
9cddeb9
Merge pull request #240 from seqan/actions/update_cpm_package_lock
eseiler Mar 19, 2026
c7784a3
Bump codecov/codecov-action from 5.5.2 to 5.5.3
dependabot[bot] Mar 23, 2026
2f34769
Merge pull request #241 from seqan/dependabot/github_actions/codecov/…
eseiler Mar 23, 2026
6832383
chore(deps): update CPM packages
seqan-actions Mar 28, 2026
7edb47b
Merge pull request #243 from seqan/actions/update_cpm_package_lock
eseiler Mar 28, 2026
536f19c
Bump codecov/codecov-action from 5.5.3 to 6.0.0
dependabot[bot] Mar 30, 2026
8708960
Merge pull request #244 from seqan/dependabot/github_actions/codecov/…
eseiler Mar 30, 2026
f8ae69a
Merge branch 'main' into chore/merge_main
eseiler Apr 23, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/ci_coverage.yml
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Expand Up @@ -79,7 +79,7 @@ jobs:
--output ${GITHUB_WORKSPACE}/build/coverage_report.xml

- name: Submit coverage build
uses: codecov/codecov-action@v5.5.2
uses: codecov/codecov-action@v6.0.0
with:
disable_search: true
fail_ci_if_error: false
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2 changes: 1 addition & 1 deletion .github/workflows/ci_install.yml
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Expand Up @@ -95,7 +95,7 @@ jobs:

- name: Upload source package
if: contains(matrix.compiler, 'gcc')
uses: actions/upload-artifact@v6
uses: actions/upload-artifact@v7
with:
name: needle-source-package
path: create_source_package/needle-*.tar.xz*
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6 changes: 3 additions & 3 deletions cmake/package-lock.cmake
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Expand Up @@ -8,7 +8,7 @@
# cmake-format: off

# hibf
set (NEEDLE_HIBF_VERSION bbca76409f5445f1404c206021fcfa37f1fd7054 CACHE STRING "")
set (NEEDLE_HIBF_VERSION eca65729de77a5d411160c487adcafe8f972342b CACHE STRING "")
CPMDeclarePackage (hibf
NAME hibf
GIT_TAG ${NEEDLE_HIBF_VERSION} # main
Expand All @@ -31,7 +31,7 @@ CPMDeclarePackage (chopper
)

# seqan3
set (NEEDLE_SEQAN3_VERSION 3.4.0 CACHE STRING "")
set (NEEDLE_SEQAN3_VERSION 3.4.2 CACHE STRING "")
CPMDeclarePackage (seqan3
NAME seqan3
VERSION ${NEEDLE_SEQAN3_VERSION}
Expand All @@ -43,7 +43,7 @@ CPMDeclarePackage (seqan3
)

# sharg
set (NEEDLE_SHARG_VERSION 1.2.1 CACHE STRING "")
set (NEEDLE_SHARG_VERSION 1.2.2 CACHE STRING "")
CPMDeclarePackage (sharg
NAME sharg
VERSION ${NEEDLE_SHARG_VERSION}
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