Search results

Make sample_filter_pass an optional pseudofield like variant_index

Status: Open.

#374 In sgkit-dev/vcztools;

· jeromekelleher opened on May 13, 2026

view -e EXPR diverges from bcftools when EXPR is pure sample-scope (FMT/...)

Status: Open.

Bug

#341 In sgkit-dev/vcztools;

· jeromekelleher opened on May 6, 2026

AttributeError: 'slice' object has no attribute 'size'

Status: Open.

Bug

#334 In sgkit-dev/vcztools;

· tomwhite opened on May 6, 2026

Performance on call_ field filtering is poor

Status: Open.

#321 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 28, 2026

Test warnings

Status: Open.

#302 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 21, 2026

bare flag identifier as the whole predicate

Status: Open.

Bug

#300 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 20, 2026

Complement-targeted regions fail on Windows + Python 3.11 (pyranges/sorted_nearest dtype bug)

Status: Open.

#290 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 17, 2026

Bug in VCF output when selected samples have all missing GTs.

bugSomething isn't workingSomething isn't working

Status: Open.

#289 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 16, 2026

Error message when decompressing .vcz data with vcztools

Status: Open.

#245 In sgkit-dev/vcztools;

· browning-lab opened on Dec 15, 2025

Document example of outputting to compressed VCF

Status: Open.

#244 In sgkit-dev/vcztools;

· hyanwong opened on Oct 30, 2025

Support higher dimensional FORMAT fields in filtering expressions

Status: Open.

#232 In sgkit-dev/vcztools;

· tomwhite opened on Jun 9, 2025

Support multiallelic sites in plink

enhancementNew feature or requestNew feature or request

Status: Open.

#224 In sgkit-dev/vcztools;

· jeromekelleher opened on May 28, 2025