Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
-
Updated
Nov 10, 2025 - R
#
danio-rerio
Here are 8 public repositories matching this topic...
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
-
Updated
Jun 13, 2023 - Shell
💻 A unified bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms. Combines multi-database ortholog search with Gene Ontology annotation extension. 🎓 PhD project, King's College London (2013-2019).
bioinformatics biogrid uniprot homologene geneontology orthomcl orthologs homology eggnog drosophila-melanogaster homo-sapiens kings-college-london danio-rerio caenorhabditis-elegans orthology-relationships inparanoid arabidopsis-thaliana saccharomyces-cerevisiae orthologous-genes schizosaccharomyces-pombe
-
Updated
Mar 16, 2026 - PHP
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
gem genome repeats ngs genome-annotation genome-browser bowtie zebrafish mappability alignability danio-rerio tsslab
-
Updated
Nov 9, 2018 - Python
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
linux bash high-performance-computing chip-seq histone-modifications hisat2 sra developmental-biology zebrafish danio-rerio computational-genomics deeptools
-
Updated
Aug 10, 2020
This code analyze the mortality (LC50) and General Morphological Score of embryos exposed to sediment and its pore water.
-
Updated
Sep 25, 2024 - R
💻 Archive of my bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms using Gene Ontology annotation extension. 🎓 Part of my PhD project, King's College London (2013-2019).
bioinformatics bioinformatics-analysis geneontology orthologs orthology drosophila-melanogaster homo-sapiens kings-college-london danio-rerio arabidopsis-thaliana saccharomyces-cerevisiae orthologous-genes schizosaccharomyces-pombe
-
Updated
Mar 16, 2026 - PHP
The repository stores files that are used to determine homology between Mus musculus and Danio rerio genomes by analyzing synteny blocks.
r chip-seq regeneration homology circos-plot danio-rerio mus-musculus tbx5 synteny-block symap cinteny
-
Updated
Feb 12, 2023 - HTML
Improve this page
Add a description, image, and links to the danio-rerio topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the danio-rerio topic, visit your repo's landing page and select "manage topics."